Browse > Article
http://dx.doi.org/10.7732/kjpr.2012.25.4.490

Molecular Phylogenetic Studies of Korean Hydrocotyle L.  

Choi, Kyoung-Su (Department of life science, Yeungnam University)
Park, Seon-Joo (Department of life science, Yeungnam University)
Publication Information
Korean Journal of Plant Resources / v.25, no.4, 2012 , pp. 490-497 More about this Journal
Abstract
Phylogenetic analyses were conducted to evaluate relationships of 5 taxa of Korean Hydrocotyle, H. spp. found in the Ulleung island including one outgroup (Centella asiatica). The molecular phylogenetic methods based on nuclear ribosomal DNA ITS region and cpDNA trnH-psbA region. Centella asiatica was used outgroup for analysis. As the result, genus Korean Hydrocotyle were grouped by 94% bootstrap value. Korean Hydrocotyle was grouped by four clades; Clade I-H. maritima, H. sibthorpides and H. yabei clade Clade II-H. nepalensis clade clade III-H. ramiflora clade clade IV-H. spp. clade. H. maritima, H. sibthorpides and H. yabei was not distinguished, seperately. H. spp. was distinctly distinguished other Korean Hydrocotyle.
Keywords
Hydrocotyle; Phylogenetic analysis; H. spp.;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 White, T.J., T. Birns, S.Lee, and J.Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR protocols : A guide to methods and applications, Innis, M., D. Gelfand, J. Sninsky and T. White (eds.), Academic Publishing Co., San Diego, USA. pp. 315-322.
2 Yoo, K.P and S.J. Park. 2012. A Phylogenetic Study of Korean Carpesium L. Based on nrDNA ITS Sequence. Korean J. Plant. Res. 25(1):96-104.   DOI
3 Nakai, T. 1952. In A synoptical Sketch of Korean Flora. Bull. Natl. Sci. Mus. p. 87.
4 Palibin, J. 1901. Consepectus Florae Koreaea III. Acta Hort. Petrop. p. 323.
5 Sang, T., D.J. Crawford, T.F. Stuessy and O.M. Silva. 1994. ITS sequences and the phylogeny of the genus Robinsonia (Asteraceae). Syst. Bot. 20:55-64.
6 Soltis, P.D., J.J. doyle and D.E. soltis. 1992. Molecular data and polyploid evolution in plants. In Molecular Systematics of Plant. Soltis, P.D., J. J. doyle and D. E. Soltis. (eds.), Chapman & Hall. NewYork, USA. pp. 177-201.
7 Son, S.W., J.H. Kim, K.J. Kim and S.J. park. 2007. Molecular evidence for the hybridity of Ilex x wandoensis and the phylogenetic study of Korean Ilex based on ITS sequence data. Gene & Genomics 31(1): 53-63.
8 Suh, Y., L.B. Thien, H.E. Reeve and E.A. Zimmer. 1993. Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of ribosomal DNA in Winteraceae. American J. Bot. 80:1042-1055.   DOI   ScienceOn
9 Sworfford, D.L. 2002. PAUP* : Phylogenetic analysis usingparsimony (*and other methods), ver. 4.0. Sinauer Associates, Sunderland, MA, USA.
10 Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin, and D.G. Higgins. 1997. The Clistal X windows interface : Flexible strategies for multiple sequence alignment aided by quality analysis tool. Nuc. Acids Res. 25:4876-4882.   DOI   ScienceOn
11 Kim, K.J. and R.K. Jansen. 1994. Comparisons of phylogenetic hypotheses among different data sets in dwarf dandelions (Krigia, Asteraceae): Additional information from internal transcribed spacer sequences of nuclear ribosomal DNA. Plant Syst. Evol. 190:157-185.
12 Van De Wiel. C.C.M, J. Van Der Scoot, J.L.C.H. Van Valkenburg, H. Duistermaat and M.J.M. Smulders. 2009. DNA barcoding discriminates the noxious invasive plant species, floating pennywort (Hydrocotyle ranuncloides L.F.), from non-invasive relatives. Molecular Ecology Resources 9:1086-1091.   DOI
13 Nakai, T. 1914. Tyosen-syokuhtu. Seongmidang. Tokyo, Japan. pp. 39-46.
14 Gregory, M. Plunkett and Antoine, N. Nicolas. 2009. The demise of subfamily Hydrocotyloideae (Apiaceae) and the re-alignment of its genera across the entire order Apiales. Mol. Phylogen. Evol. 53:134-151.   DOI
15 Kim, K.J, Y. D. Kim, J.H. Kim, S.J. Park, C.W. Park, B.Y. Sun, K.O. Yoo, B.H. Choi and S. T. Kim. 2008. Phylogenetic classification of Korean vascular flora according to the recent APG classification system. Korean J. Pl. Taxon 38:197-222 (in Korean).
16 Kimura, M. 1980. A simple method for estimating evolutionary rates of base subsititution through comparative studies of nucleotide sequence. J. Mol. Evol. 16:111-120.   DOI
17 Korea National Arboretum and The Plant Taxonomic Society of Korea. 2007. A Synonymic List of Vascular Plants in Korea. Korea National Arboretum, Pocheon. Korea. p. 203 (in Korean).
18 Lee, C.R. and H.S. Ahn. 1963. Nomina Plantarum Koreanum. Pahaksa, Publishing Co., Seoul. Korea. p. 469 (in Korean).
19 Lee, T.B. 1980. Illustration flora of Korea. Hyangmunsa Publishing Co., Seoul. Korea. pp. 827-829 (in Korean).
20 Lee, W.T. 1996. Lineamenta florae Koreae. Academy Publishing Co., Seoul, Korea. pp. 795-797 (in Korean).
21 Alvarez, I. and J.F. Wendel. 2003. Ribosomal ITS sequences and plant phylogenetic inference. Mol. Phylogen. Evol. 29:417-434.   DOI   ScienceOn
22 Linnaeus, C. 1753. Species Plantarum. Holmiae, Stockholm, Sweden. pp. 116.
23 Lookerman, D.J. and R.K. Jansen. 1996. The use of herbarium material for DNA studies. In Sampling the green world. Stussey, T. J. and S. Sohmer (eds.), Columbia University Press, NewYork, USA. pp. 205-220.
24 Mori, T. 1922. An Enumeration of plants Hithero known Corea. The government of Chosen. Seoul, Korea. p. 271.
25 Baldwin, B.G. 1992. Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants : An example from the Compositae. Mol. Phylogen. Evol. 1:3-16.   DOI   ScienceOn
26 Chung. T.H., B.S. Do, D.B. Lee and F.J. Lee. 1937. Nominia plantarum koreanum. Chosen Nat. Hist. Soc. Seoul, Korea. p. 136 (in Korean).
27 Chung, T.H., B.S. Do, D.B. Lee and H.J. Sim. 1949. Nomina Plantarum Koreanum I, Chosen Biology Society pp. 54-55 (in Korean).
28 Chung, T.H. 1957. Illustrated flora of Korea. Herb. Sinjisa pp. 88-98 (in Korean).
29 Curtis, S. and M.T. Clegg. 1984. Molecular evolution of chloroplast DNA sequences. Mol. Biol. Evol. 1:291-301.
30 Doyle, J.J. and J.L. Doyle. 1987. A rapid DNA isolation procedure of small quantities of fresh leaf tisse. Phytochem. Bull. Bot. Soc. Amer. 19:11-15.
31 Farris, J.S., Albert V.A. Kllersjo M,Lipscomb D. and A.G. Kluge. 1996. Parsimony jacknifing outperforms neighbor-joining. Cladistics 12:99-124.   DOI   ScienceOn
32 Felsenstein, J. 1985. Confidence limits on phylogeies: an approach using the bootstrap. Evolution 39:783-791.   DOI   ScienceOn