Browse > Article

Gene Analysis Related Energy Metabolism of Leaf Expressed Sequence Tags Database of Korean Ginseng (Panax ginseng C.A. Meyer)  

Lee Jong-Il (School of Natural Science, Sunchon National Univ.)
Yoon Jae-Ho (School of Agriculture and Life Science, Sunchon National Univ.)
Song Won-Seob (School of Agriculture and Life Science, Sunchon National Univ.)
Lee Bum-Soo (Research Institute of Biotechnology, BioPia Co., Ltd)
In Jun-Gyo (Research Institute of Biotechnology, BioPia Co., Ltd)
Kim Eun-Jeong (Research Institute of Biotechnology, BioPia Co., Ltd)
Yang Deok-Chun (Dept. of Oriental Medicine Material and Processing, Kyung Hee University)
Publication Information
Korean Journal of Plant Resources / v.19, no.1, 2006 , pp. 174-179 More about this Journal
Abstract
A cDNA library was constructed from leaf samples of 4-year-old Panax ginseng cultured in a field. 3,000 EST from a size selected leaf cDNA library were analyzed. The 349 of 2,896 cDNA clones has related with energy metabolism genes. The 349 known genes were categorized into nine groups according to their functional classification, aerobic respiration(48.4%), accessory proteins of electron transport and membrane associated energy conservation(17.2%), glycolysis and gluconeogenesis(3.4%), electron transport and membrane associated energy conservation(2.9%), respiration(2.0%), glycolysis methylglyoxal bypass(1.7%), metabolism of energy reserves(0.6%) and alcohol fermentation(0.3%).
Keywords
ESTs database; Metabolism; Leaf; Energy; Panax ginseng;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Altschul, S.F., W. Gish, W. Miller, E.W. Myers and D.J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410   DOI
2 Flachmann, R. and W. Kuhlbrandt. 1995. Accumulation of plant antenna complexes is regulated by post-transcriptional mechanisms in tobacco. The Plant Cell 7: 149-160   DOI
3 Hofte, H., T. Desprez, J. Amelelm, H. chiapello, M. Caboche, A. Moisan, M.F. Jourjon, J.L. Charpenteau, P. Berthomieu, D. Guerrier, J. Giraudat, F. Quigley, F. Thomas, D.Y.Y, R. Mache, M. Raynal, R. Cooke, F. Grellet, M. Deseny, Y. Parmentier, G.D. Matcillac, C. Giot, J. Fleck, G. Philipps, M. Axelos, C. Mardet, D. Tremousaygue and B. Lescure. 1993. An inventory of 1,152 expressed sequence tags obtained by partial sequencing of cDNA from Arabidopsis thaliana. Plant J. 4: 1051-1061   DOI   ScienceOn
4 John, I., R. Drake, A. Farrell, W. Cooper, P. Lee, P. Horton and D. Gireson. 1995. Delayed leaf senescence in ethylene-deficient ACC oxydase antisense tomato plants: molecular and physiogical analysis. The Plant J. 7: 483-490   DOI   ScienceOn
5 Morris, P.C., A. Kumar, D.J. Bowles and A.C. Cuming. 1990. Osmotic stress and abscisic acid regulate the expression of the Em gene of wheat. Eur. J. Biochem. 190: 625-630   DOI   ScienceOn
6 Newman, T., F.J. Bruijn, P. Green, K. Keegstra, H. Kende, L. McIntosh, J. Ohlrogge, N. Raikhel, S. Somerville and M. Thomashow. 1994. Genes galore a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106: 1241-1255   DOI
7 Park, S.W., S.W. Kim, Y.G. Lee, S.W. Kang, C.H. Lee, H.C. Lee and S.Y. Chol. 2001. Expression of CAB (chlorophyII a/b binding protein) gene in transformed plants. Korean J. Plant Tissue Culture 28: 41-45
8 Yang, D.C. 1990. Lipid peroxidation of ginseng thylakoid membrane. Korean J. Ginseng Sci. 14: 135-141   과학기술학회마을
9 Palmer, J. D. 1985. Comparative Organization of Chloroplast Genomes. Ann. Review of Genetics. 19: 325-354   DOI   ScienceOn
10 Millar, A.J. and S.A. Kay. 1996. Intrgration of circadian and phototransdiction pathways in the network controlling CAB gene transcription in Arabidopsis. Proc. Natl. Acad Sci. 93: 15491-15496
11 Boguski, M.S., T.M. Lowe and C.M. Tolstoshev. 1993. dbEST-database for 'expressed sequence tags'. Nature Genetics 4: 332-333   DOI   ScienceOn
12 Yang, D.C., M.W. Kim, Q. Chae and M.S. Kim. 1989. Effects of active oxygen species ($^1O_2, O_2-,H_2O_2$) and scavengers on the chlorophyll bleaching of leaf burning disease from Panax ginseng C.A. Meyer. Korean J. Ginseng Sci. 13: 98-104
13 Hsu, C.L. and B.C. Mullin. 1988. A new protocol for isolation of mitochondrial DNA from cotton seedlings. Plant Cell Rep. 7: 356- 360   DOI   ScienceOn
14 Cozens, A.L. and J.E. Walker. 1986. Pea chloroplast DNA encodes homologues of Escherichia coli ribosomal subunit S2 and the beta-subunit of RNA polymerase. Biochem. J. 236: 453-460   DOI
15 Sambrook, J., E.F. Rfitsch and T. Maniatis. 1989. Molecular cloning: A laboratory manual. 2nd Cold Spring Harbor Laboratory press, New York
16 Funk, C., W.P. Schroder, A. Napiwotzki, S.E. Tjus, G. Renger and B. Andersson. 1995. The PSII-S protein of higher plants; A new type of pigment-binding protein. Biochemistry 34: 11133-11141   DOI   ScienceOn
17 Park, H., B.G. Cho and M.K. Lee. 1990. Nitrogen Compounds of Korea ginseng and Their Physiological Significance. Korean J. Ginseng Sci. 14: 317-331
18 Bergmann, P., M. Schneider, G. Burkard, J.H. Weil and J.D. Rochaix. 1985. Transfer RNA gene mapping studies on chloroplast DNA from Chlamydomonas reinhardii. Plant Sci. 39: 133-140   DOI   ScienceOn
19 Loo, W.T., M.N. Cheung and L.W. Chow. 2002. Analysis of expressed sequence tags (ESTs) of flower buds in Safflower (Carthamus tinctorius L.). Life Sci. 26: 191-200
20 De, H., A.G. Jochemsen, P.T. Willemsen and G.S. Groot. 1984. Protein synthesis during chloroplast development in Spirodela oligorhiza. Coordinated synthesis of chloroplast-encoded and nuclear-encoded subunits of ATPase and ribulose-1,5-bisphosphate carboxylase. Eur. J. Biochem. 2: 161-168
21 Dron, M., M. Rahir and J.D. Rochaix. 1982. Sequence of the chloroplast DNA region of Chlamydomonas reinhardii containing th gene of the large subunit of ribulose bisphosphate carboxylase and parts of its flanking genes. J. Mol. Biol. 17: 775-793
22 Stephen, R. 2003. Expressed sequence tags: alternative or complement to whole genome sequences. Plant Science 8: 321-329   DOI   ScienceOn
23 Lee, J.H., Y.P. Lim, J.C. Park and K.T. Choi. 1994. Cloning of rubulose-1,5-bisphosphate carboxylase/oxygense large subunit (rbcL) gene from Korean ginseng (Panax ginseng C.A. Meyer). Korean J. Ginseng Sci. 19: 51-55
24 Kaneko, T., T. Katoh, S. Sato, A. Nakamura, E. Asamizu and S. Tabata. 2000. Structural analysis of Arabidopsis thaliana chromosome 3. II. Sequence features of the 4,251,695 bp regions covered by 90 P1, TAC and BAC clones. DNA Res. 30: 217-221