Genetic Diversity and Population Structure of Korean Soybean Collection Using 75 Microsatellite Markers |
Lee, Gi-An
(National Agrobiodiversity Center, National Academy of Agricultural Science, RDA)
Choi, Yu-Mi (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) Yi, Jung-Yoon (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) Chung, Jong-Wook (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) Lee, Myung-Chul (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) Ma, Kyung-Ho (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) Lee, Sok-Young (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) Cho, Jin-Woong (College of Agricultural and Life Science, Chungnam National University) Lee, Jung-Ro (National Agrobiodiversity Center, National Academy of Agricultural Science, RDA) |
1 | Schmutz, J., S. B. Cannon, J. Schlueter, J. Ma, T. Mitros, W. Nelson, D. L. Hyten, Q. Song, J. J. Thelen, and J. Cheng. 2010. Genome sequence of the palaeopolyploid soybean. Nature 463(7278) : 178-183. DOI ScienceOn |
2 | Schuelke, M. 2000. An economic method for the fluorescent labeling of PCR fragments. Nat. Biotechnol. 18(2) : 233-234. DOI ScienceOn |
3 | Wang, L., R. Guan, L. Zhangxiong, R. Chang, and L. Qiu. 2006. Genetic diversity of Chinese cultivated soybean revealed by SSR markers. Crop Sci. 46(3) : 1032-1038. DOI ScienceOn |
4 | Yoon, M. S., J. Lee, C. Y. Kim, J. H. Kang, E. G. Cho, and H. J. Baek. 2009. DNA profiling and genetic diversity of Korean soybean (Glycine max (L.) Merrill) landraces by SSR markers. Euphytica 165(1) : 69-77. DOI |
5 | Yu, H., and Y. T. Kiang. 1993. Genetic variation in South Korean natural populations of wild soybean (Glycine soja). Euphytica 68(3) : 213-221. DOI |
6 | Choi, I. Y., J. H. Kang, H. S. Song, and N. S. Kim. 1999. Genetic diversity measured by simple sequence repeat variations among the wild soybean, Glycine soja, collected along the riverside of five major rivers in Korea. Genes Genet. Syst. 74(4) : 169-177. DOI ScienceOn |
7 | Dellaporta, S. L., J. Wood, and J. B. Hicks. 1983. A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1(4) : 19-21. DOI ScienceOn |
8 | Dong, Y., L. Zhao, B. Liu, Z. Wang, Z. Jin, and H. Sun. 2004. The genetic diversity of cultivated soybean grown in China. Theor. Appl. Genet. 108(5) : 931-936. DOI |
9 | Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8) : 2611-2620. DOI ScienceOn |
10 | Guan, R., R. Chang, Y. Li, L. Wang, Z. Liu, and L. Qiu. 2010. Genetic diversity comparison between Chinese and Japanese soybeans (Glycine max (L.) Merr.) revealed by nuclear SSRs. Genet. Resour. Crop Evol. 57(2) : 229-242. DOI |
11 | Hisano, H., S. Sato, S. Isobe, S. Sasamoto, T. Wada, A. Matsuno, T. Fujishiro, M. Yamada, S. Nakayama, and Y. Nakamura. 2007. Characterization of the soybean genome using EST-derived microsatellite markers. DNA Res. 14(6) : 271-281. |
12 | Hyten, D. L., Q. Song, Y. Zhu, I. Y. Choi, R. L. Nelson, J. M. Costa, J. E. Specht, R. C. Shoemaker, and P. B. Cregan. 2006. Impacts of genetic bottlenecks on soybean genome diversity. Proc. Natl. Acad. Sci. USA 103(45) : 16666-16671. DOI ScienceOn |
13 | Song, J. Y., X. M. Piao, Y. M. Choi, G. A. Lee, J. W. Chung, J. R. Lee, Y. I. Jung, H. J. Park, and M. C. Lee. 2013. Evaluation of genetic diversity and comparison of biochemical traits of soybean (Glycine max L.) germplasm collections. Plant Breed Biotechnol 1(4) : 374-384. DOI |
14 | Kim, M. Y., S. Lee, K. Van, T. H. Kim, S. C. Jeong, I. Y. Choi, D. S. Kim, Y. S. Lee, D. Park, and J. Ma. 2010. Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome. Proc. Natl Acad. Sci. USA 107(51) : 22032-22037. DOI ScienceOn |
15 | Lee, G. A., J. S. Sung, S. Y. Lee, J. W. Chung, J. Y. Yi, Y. G. Kim, and M. C. Lee. 2014. Genetic assessment of safflower (Carthamus tinctorius L.) collection with microsatellite markers acquired via pyrosequencing method. Mol Ecol Resour 14(1) : 69-78. DOI |
16 | Lee, J. D., T. D. Vuong, H. Moon, J. K. Yu, R. Nelson, H. T. Nguyen, and J. G. Shannon. 2011. Genetic diversity and population structure of Korean and Chinese soybean [Glycine max (L.) Merr.] accessions. Crop Sci. 51(3) : 1080-1088. DOI |
17 | Li, Z., and R. L. Nelson. 2001. Genetic diversity among soybean accessions from three countries measured by RAPDs. Crop Sci. 41(4) : 1337-1347. DOI ScienceOn |
18 | Lee, J. D., J. K. Yu, Y. H. Hwang, S. Blake, Y. S. So, G. J. Lee, H. Nguyen, and J. G. Shannon. 2008. Genetic Diversity of Wild Soybean (Glycine soja Sieb. and Zucc.) Accessions from South Korea and Other Countries. Crop Sci. 48(2) : 606-616. DOI ScienceOn |
19 | Li, Y. H., M. J. Smulders, R. Z. Chang, and L. J. Qiu. 2011. Genetic diversity and association mapping in a collection of selected Chinese soybean accessions based on SSR marker analysis. Conserv. Genet. 12(5) : 1145-1157. DOI |
20 | Li, Y., R. Guan, Z. Liu, Y. Ma, L. Wang, L. Li, F. Lin, W. Luan, P. Chen, and Z. Yan. 2008. Genetic structure and diversity of cultivated soybean (Glycine max (L.) Merr.) landraces in China. Theor. Appl. Genet. 117(6) : 857-871. DOI |
21 | Liu, K., and S. V. Muse. 2005. PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics, 21(9) : 2128-2129. DOI ScienceOn |
22 | Mulato, B. M., M. Moller, M. I. Zucchi, V. Quecini, and J. B. Pinheiro. 2010. Genetic diversity in soybean germplasm identified by SSR and EST-SSR markers. Pesqui. Agropecu. Bras. 45(3) : 276-283. |
23 | Peakall, R., and P. E. Smouse. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecol. Notes 6(1) : 288-295. DOI ScienceOn |
24 | Pritchard, J., X. Wen, and D. Falush. 2007. Documentation for structure software: Version 2.2. Department of Human Genetics, University of Chicago; Department of Statistics, University of Oxford. |