Relationship of Transformation Efficiency and Metabolites Induced in Korean Soybean Cotyledons Treated with Sonication |
Song, Kitae
(Department of Life Science, Dongguk Univ.-Seoul)
Yim, Won Cheol (Department of Plant Biotechnology, Dongguk Univ.-Seoul) Jung, Gun-Ho (National Institute of Crop Science, RDA) Kim, Sun Lim (National Institute of Crop Science, RDA) Kwon, Young-Up (National Institute of Crop Science, RDA) Lee, Byung-Moo (Department of Life Science, Dongguk Univ.-Seoul) |
1 | Zaltsman, A., A. Krichevsky, S. V. Kozlovsky, F. Yasmin, and V. Citovsky. 2010. Plant defense pathways subverted by Agrobacterium for genetic transformation. Plant signaling & behavior. 5(10) : 1245-1248. DOI |
2 | Zeng, P., D. A. Vadnais, Z. Zhang, and J. C. Polacco. 2004. Refined glufosinate selection in Agrobacterium-mediated transformation of soybean [Glycine max (L.) Merrill]. Plant cell reports. 22(7) : 478-482. DOI ScienceOn |
3 | Zerback, R., K. Dressler, and D. Hess. 1989. Flavonoid compounds from pollen and stigma of Petunia hybrid, Inducers of the vir region of the Agrobacterium tumefaciens Ti plasmid. Plant Science. 62(1) : 83-91. DOI ScienceOn |
4 | Shinbo, Y., Y. Nakamura, M. Altaf-Ul-Amin, H. Asahi, K. Kurokawa, M. Arita, K. Saito, D. Ohta, D. Shibata, and S. Kanaya. 2006. KNApSAcK: A Comprehensive Species- Metabolite Relationship Database. Plant Metabolomics. 57 : 165-181. DOI |
5 | Spencer, P. A. and G. H. N. Towers. 1988. Specificity of signal compounds detected by Agrobacterium tumefaciens. Phytochemistry. 27(9) : 2781-2785. DOI ScienceOn |
6 | Stachel, S. E., E. Messens, M. V. Montagu, and P. Zambryski. 1985. Identification of the signal molecules produced by wounded plant cells that activate T-DNA transfer in Agrobacterium tumefaciens. Nature. 318(6047) : 624-629. DOI |
7 | Stougaard, J. 2000. Regulators and regulation of legume root nodule development. Plant physiology. 124(2) : 531-540. DOI ScienceOn |
8 | Strohalm, M., D. Kavan, P. Novak, M. Volny, and V. Havlicek. 2010. mMass 3: a cross-platform software environment for precise analysis of mass spectrometric data. Analytical chemistry. 82(11) : 4648-4651. DOI ScienceOn |
9 | Taguri, T., T. Tanaka, and I. Kouno. 2006. Antibacterial spectrum of plant polyphenols and extracts depending upon hydroxyphenyl structure. Biological & pharmaceutical bulletin. 29(11) : 2226-2235. DOI ScienceOn |
10 | Tang, W. 2003. Additional virulence genes and sonication enhance Agrobacterium tumefaciens-mediated loblolly pine transformation. Plant cell reports. 21(6) : 555-562. |
11 | Tautenhahn, R., C. Bottcher, and S. Neumann. 2007. Annotation of LC/ESI-MS Mass Signals. Bioinformatics Research and Development. 4414 : 371-380. DOI ScienceOn |
12 | Titulaer, M. K., I. Siccama, L. J. Dekker, A. L. C. T. van Rijswijk, R. M. A. Heeren, P. A. Sillevis Smitt, and T. M. Luider. 2006. A database application for pre-processing, storage and comparison of mass spectra derived from patients and controls. BMC bioinformatics. 7 : 403. DOI |
13 | Veena, H. Jiang, R. W. Doerge, and S. B. Gelvin. 2003. Transfer of T-DNA and Vir proteins to plant cells by Agrobacterium tumefaciens induces expression of host genes involved in mediating transformation and suppresses host defense gene expression. The Plant journal. 35(2) : 219-236. DOI ScienceOn |
14 | Trick, H. N. and J. J. Finer. 1998. Sonication-assisted Agrobacterium-mediated transformation of soybean [Glycine max (L.) Merrill] embryogenic suspension culture tissue. Plant Cell Reports. 17(6-7) : 482-488. DOI ScienceOn |
15 | Trick, H. N. and J. J. Finer. 1997. SAAT: sonication-assisted Agrobacterium-mediated transformation. Transgenic Research. 6(5) : 329-336. DOI ScienceOn |
16 | Tzfira, T. and V. Citovsky. 2002. Partners-in-infection: host proteins involved in the transformation of plant cells by Agrobacterium. Trends in cell biology. 12(3) : 121-129. DOI ScienceOn |
17 | Yan, B., M. S. S. Reddy, G. B. Collins, and R. D. Dinkins. 2000. Agrobacterium tumefaciens- mediated transformation of soybean [Glycine max (L.) Merrill.] using immature zygotic cotyledon explants. Plant Cell Reports. 19(11) : 1090-1097. DOI ScienceOn |
18 | Long, S. R. 1996. Rhizobium symbiosis nod factors in perspective. The Plant cell. 8(10) : 1885-1898. DOI ScienceOn |
19 | Matilla, M. A., M. Espinosa-Urgel, J. J. Rodríguez-Herva, J. L. Ramos, and M. I. Ramos-Gonzalez. 2007. Genomic analysis reveals the major driving forces of bacterial life in the rhizosphere. Genome biology. 8(9) : R179. DOI |
20 | Meurer, C. A., R. D. Dinkins, and G. B. Collins. 1998. Factors affecting soybean cotyledonary node transformation. Plant Cell Reports. 18(3-4) : 180-186. DOI ScienceOn |
21 | Nakamura, Y. et al., 2007. Differential metabolomics unraveling light/dark regulation of metabolic activities in Arabidopsis cell culture. Planta. 227(1) : 57-66. DOI |
22 | Oikawa, A., Y. Nakamura, T. Ogura, A. Kimura, H. Suzuki, N. Sakurai, Y. Shinbo, D. Shibata, S. Kanaya, and D. Ohta. 2006. Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometrybased metabolic phenotyping studies. Plant physiology. 142(2) : 398-413. DOI ScienceOn |
23 | Negishi, O. and T. Ozawa. 2000. Inhibition of enzymatic browning and protection of sulfhydryl enzymes by thiol compounds. Phytochemistry. 54(5) : 481-487. DOI ScienceOn |
24 | Nester, E. W. 1995. Plant Signaling in Agrobacterium- Mediated Transformation Advances in Molecular Genetics of Plant-Microbe Interactions. Current Plant Science and Biotechnology in Agriculture 21 : 3-11. |
25 | Ohta, D., D. Shibata, and S. Kanaya. 2007. Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry. Analytical and bioanalytical chemistry. 389(5) : 1469-1475. DOI |
26 | Olhoft, P. M., L. E. Flagel, C. M. Donovan, and David A Somers. 2003. Efficient soybean transformation using hygromycin B selection in the cotyledonary-node method. Planta. 216(5) : 723-735. |
27 | Olhoft P and D. Somers. 2001. L-Cysteine increases Agrobacteriummediated T-DNA delivery into soybean cotyledonary-node cells. Plant Cell Reports 20(8) : 706-711. DOI ScienceOn |
28 | Oparka, K. J., A. G. Roberts, S. S. Cruz, P. Boevink, D. A. M. Prior, and A. Smallcombe. 1997. Using GFP to study virus invasion and spread in plant tissues. Nature. 388 : 401-402. DOI ScienceOn |
29 | Owens, L. D. and A. C. Smigocki. 1988. Transformation of Soybean Cells Using Mixed Strains of Agrobacterium tumefaciens and Phenolic Compounds. Plant physiology. 88(3) : 570-573. DOI ScienceOn |
30 | Parker, J. E., M. J. Coleman, V. Szabo, L. N. Frost, R. Schmidt, E. A. van der Biezen, T. Moores, C. Dean, M. J. Daniels, and J. D. Jones. 1997. The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the toll and interleukin-1 receptors with N and L6. The Plant cell. 9(6) : 879-894. DOI ScienceOn |
31 | Hartmann, A., M. Schmid, D. van Tuinen, and G. Berg. 2009. Plant-driven selection of microbes. Plant and Soil. 321(1-2) : 235-257. DOI |
32 | Santarém, E. R., H. N. Trick, J. S. Essig, and J. J. Finer. 1998. Sonication-assisted Agrobacterium-mediated transformation of soybean immature cotyledons optimization of transient expression. Plant Cell Reports. 17(10) : 752-759. DOI ScienceOn |
33 | Schmutz, J. et al. 2010. Genome sequence of the palaeopolyploid soybean. Nature. 463(7278) : 178-183. DOI ScienceOn |
34 | Gunstone, F. 2001. Soybeans pace boost in oilseed production. Inform. 11 : 1287-1289. |
35 | Hegde, V. R., P. Dai, M. Chu, M. Patel, R. Bryant, J. Terracciano, P. R. Das, and M. S. Puar. 1997. Neurokinin receptor inhibitors: fermentation, isolation, physico-chemical properties, structure and biological activity. The Journal of antibiotics. 50(12) : 983-991. DOI |
36 | Hinchee, M. A. W., D. V. Connor-Ward, C. A. Newell, R. E. McDonnell, S. J. Sato, C. S. Gasser, D. A. Fischhoff, D. B. Re, R. T. Fraley, and R. B. Horsch. 1988. Production of Transgenic Soybean Plants Using Agrobacterium-Mediated DNA Transfer. Nature Biotechnology. 6(8) : 915-922 DOI |
37 | Hirai, M. Y., M. Yano, D. B. Goodenowe, S. Kanaya, T. Kimura, M. Awazuhara, M. Arita, T. Fujiwara, and Kazuki Saito. 2004. Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America. 101(27) : 10205-10210. DOI ScienceOn |
38 | Holton, T. A. and E. C. Cornish. 1995. Genetics and Biochemistry of Anthocyanin Biosynthesis. The Plant cell. 7(7) : 1071-1083. DOI ScienceOn |
39 | Horn, D. M., R. A. Zubarev, and F. W. McLafferty. 2000. Automated reduction and interpretation of high resolution electrospray mass spectra of large molecules. Journal of the American Society for Mass Spectrometry. 11(4) : 320-332. DOI ScienceOn |
40 | Iijima, Y. et al. 2008. Metabolite annotations based on the integration of mass spectral information. The Plant journal. for cell and molecular biology. 54(5) : 949-962 DOI ScienceOn |
41 | Joubert, P., D. Beaupere, A. Wadouachi, S. Chateau, R. S. Sangwan, and B. S. Sangwan-Norreel. 2004a. Effect of phenolic glycosides on Agrobacterium tumefaciens virH gene induction and plant transformation. Journal of natural products. 67(3) : 348-351. DOI ScienceOn |
42 | Joubert, P., D. Beaupere, A. Wadouachi, S. Chateau, R. S. Sangwan, and B. S. Sangwan-Norreel. 2004b. Effect of phenolic glycosides on Agrobacterium tumefaciens virH gene induction and plant transformation. Journal of natural products. 67(3) : 348-351. DOI ScienceOn |
43 | Kado, C. I. and M. G. Heskett. 1970. Selective media for isolation of Agrobacterium, Corynebacterium, Erwinia, Pseudomonas, and Xanthomonas. Phytopathology. 60(6) : 969-976. DOI ScienceOn |
44 | Ko, T.-S., S. Lee, S. K. Farrand, and S. S. Korban. 2004. A partially disarmed vir helper plasmid, pKYRT1, in conjunction with 2,4-dichlorophenoxyactic acid promotes emergence of regenerable transgenic somatic embryos from immature cotyledons of soybean. Planta. 218(4) : 536-541. DOI |
45 | Koes, R. E., F. Quattrocchio, and J. N. M. Mol. 1994. The flavonoid biosynthetic pathway in plants. Function and evolution. BioEssays. 16(2) : 123-132. DOI ScienceOn |
46 | Latha, S. and A. Mahadevan. 1997. Role of rhizobia in the degradation of aromatic substances. World Journal of Microbiology and Biotechnology. 13(6) : 601-607. DOI ScienceOn |
47 | Baulcombe, D. C., S. Chapman, and S. Santa Cruz. 1995. Jellyfish green fluorescent protein as a reporter for virus infections. The Plant journal. for cell and molecular biology. 7(6) : 1045-1053. DOI ScienceOn |
48 | Brencic, A., A. Eberhard, and S. C. Winans. 2004. Signal quenching, detoxification and mineralization of vir geneinducing phenolics by the VirH2 protein of Agrobacterium tumefaciens. Molecular microbiology. 51(4) : 1103-1115. DOI ScienceOn |
49 | Berthelot, K., D. Buret, B. Guerin, D. Delay, J. Negrel, and F. M. Delmotte. 1998. vir-Gene-inducing activities of hydroxycinnamic acid amides in Agrobacterium tumefaciens. Phytochemistry. 49(6) : 1537-1548. DOI ScienceOn |
50 | Bhattacharya, A., P. Sood, and V. Citovsky. 2010. The roles of plant phenolics in defence and communication during Agrobacterium and Rhizobium infection. Molecular plant pathology. 11(5) : 705-719. |
51 | Chalfie, M., Y. Tu, G. Euskirchen, W. W. Ward, and D. C. Prasher. 1994. Green fluorescent protein as a marker for gene expression. Science. 263(5148) : 802-805. DOI |
52 | Clauser, K. R., P. Baker, and A. L. Burlingame. 1999. Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching. Analytical chemistry. 71(14) : 2871-2882. DOI ScienceOn |
53 | Cohen, M. F., Y. Sakihama, and H. Yamasaki. 2001. Roles of plant flavonoids in interactions with microbes. From protection against pathogens to the mediation of mutualism. Recent research developments in plant physiology : 157-173. |
54 | Cushnie, T. P. T., and A. J. Lamb. 2005. Antimicrobial activity of flavonoids. International journal of antimicrobial agents. 26(5) : 343-356. DOI ScienceOn |
55 | Delzer, B. W., D. A. Somers, and J. H. Orf. 1990. Agrobacterium tumefaciens Susceptibility and Plant Regeneration of 10 Soybean Genotypes in Maturity Groups 00 to II. Crop Science. 30(2) : 320-322. DOI |
56 | Ditt, R. F., E W Nester, and L. Comai. 2001. Plant gene expression response to Agrobacterium tumefaciens. Proceedings of the National Academy of Sciences of the United States of America. 98(19) : 10954-10959. DOI ScienceOn |
57 | Gamborg, O. L., R. A. Miller, and K. Ojima. 1968. Nutrient requirements of suspension cultures of soybean root cells. Experimental Cell Research. 50(1) : 151-158. DOI ScienceOn |
58 | Donaldson, P. A. and D. H. Simmonds. 2000. Susceptibility to Agrobacterium tumefaciens and cotyledonary node transformation in short-season soybean. Plant Cell Reports. 19 : 478-484. DOI ScienceOn |
59 | Ferrazzano, G. F., I. Amato, A. Ingenito, A. De Natale, and A. Pollio. 2009. Anti-cariogenic effects of polyphenols from plant stimulant beverages (cocoa, coffee, tea). Fitoterapia. 80(5) : 255-262. DOI ScienceOn |
60 | Gage, D. J., T. Bobo, and S. R. Long. 1996. Use of green fluorescent protein to visualize the early events of symbiosis between Rhizobium meliloti and alfalfa (Medicago sativa). Journal of bacteriology. 178(24) : 7159-7166. |
61 | Gelvin, S. B. 2000. Agrobacterium and plant genes involved in T-DNA transfer and integration. Annual review of plant physiology and plant molecular biology. 51 : 223-256. DOI ScienceOn |
62 | Aharoni, A., C. H. Ric de Vos, H. A. Verhoeven, C. A. Maliepaard, G. Kruppa, R. Bino, and D. B. Goodenowe. 2002. Nontargeted metabolome analysis by use of Fourier Transform Ion Cyclotron Mass Spectrometry. Omics. a journal of integrative biology. 6(3) : 217-234. DOI ScienceOn |
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