1 |
Ai, C., Liang, G., Sun, J., Wang, X., He, P., and Zhou, W., 2013, Different roles of rhizo-sphere effect and long-term fertilization in the activity and community structure of ammonia oxidizers in a calcareous fluvo-aquic soil, Soil Biol. Biochem., 57, 30-42.
DOI
|
2 |
Alves, R.J.E., Wanek, W., Zappe, A., Richter, A., Svennin, M.M., Schleper, C., and Urich, T., 2013, Nitrification rates in arctic soils are associated with functionally distinct populations of ammonia-oxdizing archaea, ISME J., 7, 1620-1631.
DOI
|
3 |
Booth, M.S., Stark, J.M., and Rastetter, E., 2005, Controls on nitrogen cycling in terrestrial ecosystem: a synthetic analysis of literature data, Ecol. Monogr., 75, 139-157.
DOI
|
4 |
Buresh, R.J. and De, Datta, S.K., 1990, Denitrification losses from puddle rice soils in the tropics, Biol. Fert. Soils, 9, 1-13.
DOI
|
5 |
Gubry-Rangin, C., Nicol, G.W., and Prosser, J.I., 2010, Archaea rather than bacteria control nitrification in two agricultural acidic soils, FEMS Microbiol. Ecol., 74, 566-574.
DOI
|
6 |
Habteselassie, M.Y., Xu, L., and Norton, J.M., 2013, Ammoniaoxidizer communities in an agricultural soil treated with contrasting nitrogen sources, Front. Microbiol., 4, 326.
|
7 |
Harrison, M.D., Groffman, P.M., Mayer, P.M., Kaushal, S.S., and Newcomer, T.A., 2011, Denitrification in alluvial wetlands in an urban landscape, J. Environ. Qual., 40, 634-646.
DOI
|
8 |
Hatzenpichler, R., Lebedeva, E.V., Spieck, E., Stoecker, K., Richter, A., Daims, H., and Wagner, M., 2008, A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring, Proc. Natl. Acad. Sci. U.S.A., 105, 2134-2139.
DOI
|
9 |
Jiang, Q.Q. and Bakken, L.R., 1999, Comparison of Nitrosospira strains isolated from terrestrial environments, FEMS Microbiol. Ecol., 30, 171-186.
DOI
|
10 |
Jiang, H., Huang, L., Deng, Y., Wang, S., Zhou, Y., Liu, L., and Dong, H., 2014a, Latitudinal distribution of ammonia-oxidizing bacteria and archaea in the agricultural soils of eastern China, Applied and Environ. Microbiol., 80, 5593-5602.
DOI
|
11 |
Jiang, Y., Jin, C., and Sun, B., 2014b, Soil aggregate stratification of nematodes and ammonia oxidizers affects nitrification in an acid soil, Environ. Microbiol., 16, 3083-3094
DOI
|
12 |
Kim, H. and Jaffé, P., 2007, Spatial distribution and physiological state of bacteria in a sand column experiment during the biodegradation of toluene, Water Res., 41, 2089-2100.
DOI
|
13 |
Konneke, M., Bernhard, A.E., de la Torre, J.R., Walker, C.B., Waterbury, J.B., and Stahl, D.A., 2005, Isolation of an autotropic ammonia-oxidizing marine archaeon, Nature, 437, 543-546.
DOI
|
14 |
Lan, T., Han, Y., Roelcke, M., Nieder, R., and Cai, Z., 2013, Effects of the nitrification inhibitor dicyandiamide (DCD) on gross N transformation rates and mitigating N2O emission in paddy soils, Soil Biol. Biochem., 67, 174-182.
DOI
|
15 |
Lehtovirta-Morley, L.E., Stoecker, K., Vilcinskas, A., Prosser, J.J., and Nichol, G.W., 2011, Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil, Proc. Natl. Acad. Sci. U.S.A., 108(38), 15892-15897.
DOI
|
16 |
Leininger, S., Urich, T., Schloter, M., Schwark, L., Qi, J., Nicol, G.W., Prosser, J.I., Schuster, S.C., and Schleper, C., 2006, Archaea predominate among ammonia-oxidizing prokaryotes in soils, Nature, 442, 806-809.
DOI
|
17 |
Martens-Habbena, W., Berube, P.M., Urakawa, H., de la Torre, J.R., and Stahl, D.A., 2009, Ammonia oxidation kinetics determine niche separation of nitrifying archaea and bacteria, Nature, 461, 976-979.
DOI
|
18 |
Nicolaisen, M.H., Risgaard-petersen, N., Revsbech, N.P., Reichardt, W., and Ramsing, N.B., 2004, Nitrification-denitrification dynamics and community structure of ammonia oxidizing bacteria in a high yield irrigated Philippine rice field, FEMS Microbiol. Ecol., 49, 359-369.
DOI
|
19 |
Myrold, D.D., Zeglin, L.H., and Jansson, J.K., 2014, The potential of metagenomics approaches for understanding soil microbial processes, Soil Sci. Soc. Am. J., 78, 3-10.
DOI
|
20 |
Nicol, G.W., Leininger, S., Schleper, C., and Prosser, J.I., 2008, The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria, Environ. Microbiol., 10, 2966-2978.
DOI
|
21 |
Norton, J.M. and Stark, J.M., 2011, Regulation and measurement of nitrification in terrestrial systems, Methods in Enzymol., 486, 343-368.
DOI
|
22 |
Offre, P., Prosser, J.I., and Nicol, G.W., 2009, Growth of ammonia-oxidizing archaea in soil microcosms is inhibited by acetylene, FEMS Microbiol. Ecol., 70, 99-108.
DOI
|
23 |
Okano, Y., Hristova, K.R., Leutenegger, C.M., Jackson, L.E., Denison, R.F., and Gebreyesus, B., 2004, Application of realtime PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil, Appl. Environ. Microbiol., 70, 1008-1016.
DOI
|
24 |
Phongpan, S. and Mosier, A.R., 2003, Effect of crop residue management on nitrogen dynamics and balance in a lowland rice cropping system, Nutr. Cycl. Agroecosys., 66, 133-142.
DOI
|
25 |
Rust, C.M., Aelion, C.M., and Flora, J.R.V., 2000, Control of pH during denitrification in sub-surface sediment microcosms using encapsulated phosphate buffer, Water Res., 34(5), 1447-1454.
DOI
|
26 |
Taylor, A.E., Zeglin, L.H., Wanzek, T.A., Myrold, D.D., and Bottomley, P.J., 2012, Dynamics of ammonia-oxidizing archaea and bacteria populations and contributions to soil nitrification potentials, ISME J., 6, 2024-2032.
DOI
|
27 |
Schleper, C. and Nicol, G.W., 2010, Ammonia-oxidising archaea - physiology, ecology and evolution, In: R.K. Poole (ed.), Advances in Microbal Physiology, vol. 57, Academic Press Ltd-Elsevier Science Ltd, London, p. 1-41.
|
28 |
Shen, J.P., Zhang, L.M., Zhu, Y.G., Zhang, J.B., and He, J.Z., 2008, Abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea communities of an alkaline sandy loam, Environ. Microbiol., 10, 1601-1611.
DOI
|
29 |
Taylor, A.E., Vajrala, N., Giguere, A.T., Gitelman, A.I., Arp, D.J., Myrold, D.D., Saya-vedra-Soto, L., and Bottomley, P.J., 2013, Use of aliphatic n-alkynes to discriminate soil nitrification activities of ammonia-oxidizing thaumarchaea and bacteria, Appl. Environ. Microbiol., 79, 6544-6551.
DOI
|
30 |
Tourna, M., Stieglmeier, M., Spang, A., Könneke, M., Schintlmeister, A., Urich, T., Engel, M., Schloter, M., Wagner, M., Richter, A., and Schleper, C., 2011, Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil, Proc. Natl. Acad. Sci. U.S.A., 108, 8420-8425.
DOI
|
31 |
Treusch, A., Leininger, S., Kletzin, A., Schuster, Sc.R., Klenk, H.P., and Schleper, C., 2005, Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling, Environ. Microbiol., 7, 1985-1995.
DOI
|
32 |
Wessen E., Soderstrom, M, Stenberg, M., Bru, D., Hellman, M., Welsh, A., Thomsen, F., Klemedtson, L., Philippot, L., and Hallin, S., 2011, Spatial distribution of ammonia-oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning, ISME J., 5, 1213-1225.
DOI
|
33 |
Zhang, L.-M., Offre, P.R., He, J.-Z., Verhamme, D.T., Nicol, G.W., and Prosser, J.I., 2010, Autotrophic ammonia oxidation by soil thaumarchaea, Proc. Natl. Acad. Sci. U.S.A., 107, 17240-17245.
DOI
|
34 |
Wang, Y., Ke, X., Wu, L., and Lu, Y., 2009, Community composition of ammonia-oxidizing bacteria and archaea in rice field soil as affected by nitrogen fertilization, Syst. Appl. Microbiol., 32, 27-36.
DOI
|