Browse > Article
http://dx.doi.org/10.5012/bkcs.2014.35.9.2655

Discovery of Novel DUSP4 Inhibitors through the Virtual Screening with Docking Simulations  

Park, Hwangseo (Department of Bioscience and Biotechnology, Sejong University)
Jeon, Tae Jin (Department of Bioengineering, Hanyang University)
Chien, Pham Ngoc (Department of Bioengineering, Hanyang University)
Park, So Ya (Department of Bioengineering, Hanyang University)
Oh, Sung Min (University of Illinois at Urbana-Champaign)
Kim, Seung Jun (Medical Proteomics Research Center, Korea Research Institute of Bioscience and Biotechnology)
Ryu, Seong Eon (Department of Bioengineering, Hanyang University)
Publication Information
Abstract
Dual specificity protein phosphatase 4 (DUSP4) has been considered a promising target for the development of therapeutics for various human cancers. Here, we report the first example for a successful application of the structure-based virtual screening to identify the novel small-molecule DUSP4 inhibitors. As a consequence of the virtual screening with the modified scoring function to include an effective molecular solvation free energy term, five micromolar DUSP4 inhibitors are found with the associated $IC_{50}$ values ranging from 3.5 to $10.8{\mu}M$. Because these newly identified inhibitors were also screened for having desirable physicochemical properties as a drug candidate, they may serve as a starting point of the structure-activity relationship study to optimize the medical efficacy. Structural features relevant to the stabilization of the new inhibitors in the active site of DUSP4 are discussed in detail.
Keywords
Virtual screening; Docking; DUSP4; Inhibitor; Drug design;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 Park, H.; Yu, K. R.; Ku, B.; Kim, B. Y.; Kim, S. J. Theor. Biol. Med. Model 2013, 10, 49.   DOI
2 Park, H.; Chien, P. N.; Chun, H.-J.; Ryu, S. E. Bull. Korean Chem. Soc. 2013, 34, 2006.   DOI
3 Gasteiger, J.; Marsili, M. Tetrahedron 1980, 36, 3219.   DOI   ScienceOn
4 Park, H.; Kyung, A.; Lee, H.-J.; Kang, S.; Yoon, T.-S.; Ryu, S. E.; Jeong, D. G. Med. Chem. Res. 2013, 22, 3905.   DOI
5 Park, H.; Jeon, J. H. Phys. Rev. E 2007, 75, 021916.   DOI
6 Park, H.; Hong, S.; Kim, J.; Hong, S. J. Am. Chem. Soc. 2013, 135, 8227.   DOI
7 Stouten, P. F. W.; Frommel, C.; Nakamura, H.; Sander, C. Mol. Simul. 1993, 10, 97.   DOI   ScienceOn
8 Choi, H.; Kang, H.; Park, H. J. Cheminformatics 2013, 5, 8.   DOI
9 Park, H.; Park, S. Y.; Oh, J. J.; Ryu, S. E. J. Biomol. Screen 2013, 18, 226.   DOI
10 Park, H.; Park, S. Y.; Ryu, S. E. J. Mol. Graph. Model 2013, 39, 65.   DOI
11 Park, H.; Choe, H.; Hong, S. Bioorg. Med. Chem. Lett. 2014, 24, 835.   DOI
12 Park, H.; Lee, H. S.; Ku, B.; Kim, S. J. Med. Chem. Res. 2014, 23, 1016.   DOI
13 Teutschbein, J.; Haydn, J. M.; Samans, B.; Krause, M.; Eilers, M.; Schartl, M.; Meierjohann, S. BMC Cancer 2010, 10, 386.   DOI
14 Sieben, N. L.; Oosting, J.; Flanagan, A. M.; Prat, J.; Roemen, G. M.; Kolkman-Uljee, S. M.; van Eijk, R.; Cornelisse, C. J.; Fleuren, G. J.; van Engeland, M. J. Clin. Oncol. 2005, 23, 7257.   DOI   ScienceOn
15 Kawai, K.; Jijiwa, M.; Shimono, Y.; Kurokawa, K.; Murakumo, Y.; Ichihara, M.; Takahashi, M. Cancer Sci. 2003, 94, 992.   DOI
16 Groschl, B.; Bettstetter, M.; Giedl, C.; Woenckhaus, M.; Edmonston, T.; Hofstadter, F.; Dietmaier, W. Int. J. Cancer 2013, 132, 1537.   DOI
17 Lawan, A.; Al-Harthi, S.; Cadalbert, L.; McCluskey, A. G.; Shweash, M.; Grassia, G.; Grant, A.; Boyd, M.; Currie, S.; Plevin, R. J. Biol. Chem. 2011, 286, 12933.   DOI
18 Jeong, D. G.; Jung, S. K.; Yoon, T. S.; Woo, E. J.; Kim, J. H.; Park, B. C.; Ryu, S. E.; Kim, S. J. Proteins 2009, 76, 763.   DOI
19 Hayashi, R.; Tanoue, K.; Durell, S. R.; Chatterjee, D. K.; Jenkins, L. M.; Appella, D. H.; Appella, E. Biochemistry 2011, 50, 4537.   DOI   ScienceOn
20 Shoichet, B. K.; Leach, A. R.; Kuntz, I. D. Proteins 1999, 34, 4.   DOI   ScienceOn
21 Jeffrey, G. A. An Introduction to Hydrogen Bonding; Oxford University Press: Oxford, 1997.
22 Lipinski, C. A.; Lombardo, F.; Dominy, B. W.; Feeney, P. J. Adv. Drug Delivery Rev. 1997, 23, 3.   DOI   ScienceOn
23 Hasegawa, T.; Enomoto, A.; Kato, T.; Kawai, K.; Miyamoto, R.; Jijiwa, M.; Ichihara, M.; Ishida, M.; Asai, N.; Murakumo, Y.; Ohara, K.; Niwa, Y.; Goto, H.; Takahashi, M. Oncogene 2008, 27, 5684.   DOI
24 Morris, G. M.; Goodsell, D. S.; Halliday, R. S.; Huey, R.; Hart, W. E.; Belew, R. K.; Olson, A. J. J. Comput. Chem. 1998, 19, 1639.   DOI   ScienceOn