Browse > Article
http://dx.doi.org/10.5012/bkcs.2002.23.11.1527

The Crystal Structure of One Natural Compound Cyclo-(1,10-Docandiamino-11,20-Docanedioic) Amide (1,12-Diazacyclodocosane-2,11-Dione)  

Wei, Wan-Xing
Pan, Yuan-Jiang
Publication Information
Abstract
1,12-diazacyclodocosane-2,11-dione was first isolated from a plant Phyllanthus niruri Linn. Its structure has been determined by means of spectroscopy methods and X-ray crystallography. Two peptide groups in the big ring (lactam) are the main factors influencing intermolecular contacts. The hydrogen-bond interaction of these hydrophilic groups is observed in the crystal structure. Meanwhile, C-H···O hydrogen bonds in molecules contribute to the formation of the whole crystal. These two kinds of hydrogen-bond form six- member rings among molecules. This compound crystallizes in the triclinic space group P-1 with a= 9.588(1) $\AA$, b= $9.850(1)\AA$, c = $11.810(1)\AA$, $\alpha=$ 68.18(1)$^{\circ}C$ , $\beta=$ 84.98(1), $\gamma$ = 86.03(1)$^{\circ}C$ , V = $1030.66(17)\AA3$ , Z = 2. A disorder of five-member carbon chain in the whole ring is observed in the title compound. The bond angle 105.8(4) is determined for a extreme configuration C(14)-C(15)-C(16), and 117.7(10) for another extreme configuration C(14')-C(15')-C(16'). In this crystal, two molecules are tied each other by short intermolecular hydrogen bonds, the oxygen atom being tied by hydrogen bond to nitrogen atom of another two molecules. The NMR and IR spectral data coincides to the structure of the compound.
Keywords
1,12-Diazacyclodocosane-2,11-dione; Cyclo-(1,10-docandiamino-11,20-Docanedioic) amide; Crystal structure; Phyllanthus niruri Linn;
Citations & Related Records

Times Cited By Web Of Science : 2  (Related Records In Web of Science)
Times Cited By SCOPUS : 2
연도 인용수 순위
1 Wawrzycka, I.; Stepniak, K.; Awomir, M. S.; KozioTadeusz Lis Anna E.; Abboud, K. A. Journal of Molecular Structure 1999, 474, 157.   DOI   ScienceOn
2 Rajeshkumar, N. V.; Kuttan, R. Journal of Enthnopharmacology 2000, 73, 215.   DOI   ScienceOn
3 Calixto, J. B.; Santos, R. S. A.; Paulino, N. Cient. Cult. 1997, 49(5/6), 422.
4 International Tabales for X-ray Crystallography, VOL. IV, Table 2.2A, Kynoch Press: Birmingham, England, 1974.
5 Suctton, P. W.; Bradley, A.; Mark, R. J.; Elsegood, M. R. J.; Farras, J.; Jackson, R. F. W. Tetrahetron Letters 1999, 40, 2629.   DOI   ScienceOn
6 Hussaain, R. A.; Dickey, J.K.; Rosser, M. P. J. Nat. Prod. 1995, 58(10), 1515.   DOI
7 Wei, W. X.; Gong, X. G.; Ishrud, O.; Pan, Y. J. Bull. Korean Chem. Soc. 2002, 23(6), 896.   DOI   ScienceOn
8 Thyagarajan, S. P. et al. The Lancet. 1988, 1, 764.
9 Syamasundar, K. V.; Bikram Singh; Thakur, R. S. J. Ethropharmacol. 1985, 14(1), 41.   DOI   ScienceOn
10 Polya, G. M.; Wang, B. H. et al. Phytochemistry 1995, 38(2), 307.   DOI   ScienceOn
11 Ott, M.; Thyagarajan, S. P.; Gupta, S. Eur. J. Clin. Invest. 1997, 27(1), 908.   DOI   ScienceOn
12 Ogata, T.; Higuchi, H. et al. AIDS Res. Hum. Retroviruses. 1992, 8(11), 1937.   DOI   ScienceOn
13 Joy, K. L.; Kuttan, R. J. Clin. Biochem. Nutr. 1998, 24(3), 133.   DOI   ScienceOn
14 Eur. Pat. Appl. EP.199, 429, 1986.
15 Lee, C. D.; Ott, M.; Thyagarajan, S. P. Eur. J. Clin. Invst. 1996, 26(12), 1069.   DOI   ScienceOn
16 Wan, L.; Jiang, Z.-Z.; Huang, B. Z. Xinzhongyi. 1997, 29(5), 39 (China).
17 Sheldrick, G. M. SHELXTL-Plus, Structure Determination Software Programs, Siemens Analytical X-Ray Instruments; Madison, WI, 1990.
18 Gutman, A. L.; Meyer, E.; Xu, Y.; Abell, C. Tetrahedron Letter 1992, 33(27), 3943.   DOI   ScienceOn