1 |
L. Holm and C. Sander, 'Protein structure comparison by alignment of distance matrices,' Journal of Molecular Biology, Vol.233, pp. 123-138, 1993
DOI
ScienceOn
|
2 |
K. S. Arun, T. S. Huang, and S. D. Blostein, 'Least-squaresfitting of two 3-D point sets,' IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol.PAMI-9, No.5, pp. 698-700, 1987
DOI
ScienceOn
|
3 |
L. Chen, T. Zhou and Y. Tang, 'Protein structure alignment by deterministic annealing,' Bioinformatics, Vol.21, No.1, pp. 51-62, 2005
DOI
ScienceOn
|
4 |
W. R. Taylor and C. O. Orengo, 'Protein structure alignment,' Journal of Molecular Biology, Vol.208, pp. 1-22, 1989
DOI
|
5 |
I. Lotan and F. Schwarzer, 'Approximation of Protein Structure for Fast Similarity Measures,' Journal of Computational Biology, Vol.11, No.2-3, pp. 299-317, 2004
DOI
ScienceOn
|
6 |
D. Frishman and P. Argos, 'Knowledge-based protein secondary structure assignment,' Proteins, Vol.23, pp. 566-579, 1995
DOI
ScienceOn
|
7 |
I. A. Jewett, C. C. Huang and T. E. Ferrin, 'MINRMS: an efficient algorithm for determining protein structure similarity using root-meansquared-distance,' Bioinformatics, Vol.19, No.5, pp. 625-634, 2003
DOI
ScienceOn
|
8 |
F. N. Abu-Khzam, N. E. Baldwin, M. A. Langston and N. F. Samatova, 'On the Relative Efficiency of Maximal Clique Enumeration Algorithms, with Applications to High-Throughput Computational Biology,' Proceeding of International Conference on Research Trends in Science and Technology, 2005
|
9 |
I. Eidhammer and I. Jonassen, 'Protein structure comparison and structure patterns - an algorithmic approach,' ISMB tutorial, 2001
|
10 |
I. N. Shindyalov and P. E. Bourne, 'Protein structure alignment by incremental combinatorial extension (CE) of the optimal path,' Protein Engineering, Vol.11, No.9, pp. 739-747, 1998
DOI
|
11 |
O. Camoglu, T. Kahveci and A. K. Singh, 'Indexbased Similarity Search for Protein Structure Databases,' Journal of Bioinformatics and Computational Biology, Vol.2, No.1, pp. 99-126, 2004
DOI
ScienceOn
|
12 |
A. G. Murzin, S. E. Brenner, T. Hubbard and C. Chothia, 'SCOP: a structural classification of proteins database for the investigation of sequences and structures,' Journal of Molecular Biology, Vol.247, pp. 536-540, 1995
|
13 |
V. Stix, 'Finding all maximal cliques in dynamic graphs,' Computational Optimization Application, Vol.27, No.2, pp. 173-186, 2004
DOI
ScienceOn
|
14 |
E. Tomita, A. Tanaka, and H. Takahashi, 'The worst-case time complexity for generating all maximal cliques,' Proceeding of 10th International Computing and Combinatorics Conference (LNCS 3106), pp. 161-170, 2004
|
15 |
RCSB Protein Data Bank (http://www.rcsb.org/pdb)
|
16 |
B. Dahiya and S. Mayo, 'De Novo protein design: fully automated sequence selection,' Science, Vol. 278, pp. 82-87, 1997
DOI
|
17 |
M. A. Erdmann, 'Protein Similarity from Knot Theory: Geometric Convolution and Line Weavings,' Journal of Computational Biology, Vol.12, No.6, pp. 609-637, 2005
DOI
ScienceOn
|
18 |
C. Bron and J. Kerbosch, 'Algorithm 457: finding all cliques of an undirected graph,' Communications of the ACM, Vol.16, pp. 575-577, 1973
DOI
|
19 |
W. Kabsch and C. Sander, 'Dictionary of protein secondary structures: pattern recognition of hydrogen-bonded and geometrical features,' Biopolymers, Vol.22, pp. 2511-2631, 1983
|
20 |
L. Holm and C. Sander, '3-D lookup: Fast protein structure database searches at 90% reliability,' Proceeding of International Conference on Molecular Biology, pp. 179-187, 1995
|
21 |
W. R. Taylor, 'Protein structure comparison using iterated double dynamic programming,' Protein Science, Vol.8, pp. 654-665, 1999
DOI
ScienceOn
|
22 |
J. F. Gibrat, T. Madej and S. H. Bryant, 'Surprising similarities in structure comparison,' Current Opinion Structural Biology, Vol.6, No.3, pp. 377-385, 1996
DOI
ScienceOn
|
23 |
R. Nussinov and H. J. Wolfson, 'Efficient detection of three-dimensional structural motifs in biological macromolecules by computer vision techniques,' Proceeding of National Academy of Sciences of the USA, pp. 10495-10499, 1991
|
24 |
P. E. Bourne and H. Weissig, Structural Bioinformatics, John Wiley & Sons Inc, 2003
|
25 |
F. S. Collins, A. Patrinos, E. Jordan, A. Chakravarti, R. Gesteland, L. Walters, and the members of the DOE and NIH planning groups, 'New Goals for the U.S. Human Genome Project: 1998-2003,' Science, Vol.282, No.5389, pp. 682-689, 1998
DOI
|