Browse > Article

Design and Implementation of SOAP Servers Object Model for Gene Interaction Databases  

LEE HO IL ((주)마크로젠)
Yoo Seongjoon (세종대학교 컴퓨터공학부)
Kim Minkyung (이화여자대학교 공과대학 컴퓨터학과)
Abstract
Recently main Bioinformatics databases(DDBJ, ENSEMBL, KEGG, etc.) provide analysis tools and data using web services for the convenience of bioinformaticians. Thus, defining SOAP server objects and their methods are very important to provide services for web services. We define SOAP server objects for interaction databases such as BIND, MINT and DIP.
Keywords
Web services; soap; bioinformatics; interaction; database; integration;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Bader, G.D. & Hogue, C.W, BIND-a data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics 16, 465-477, MARCH 2000   DOI   ScienceOn
2 http://psidev.sourceforge.net
3 http://dip.doe-mbi.ucla.edu
4 http://cbm.bio.uniroma2.it/mint
5 H. Sugawara & S. Miyazaki, Biological SOAP servers and web services provided by the public sequence data bank, Nucleic Acids Research, 31, 3836-3839, APRIL 2003   DOI   ScienceOn
6 http://www.ebi.ac.uk
7 Cheryl Wolting & Cris Alfarano & Brian Bobechko & Cheryl D'Abreo & Vicki Lay & Susan Moore & Brigitte Tuekam, BIND Curation Reference Manual, BIND, 2003
8 Min Kyung Kim, Hyun Seok Park and Seong Joon Yoo, 'Crosstalk Between Metabolic and Regulatory Pathways,' GIW2003, December 2003
9 이호일, 상호작용 데이타베이스의 SOAP 서버를 위한 객체 모델 설계 및 구현, 석사 논문, 2004년 8월, 세종대학교
10 http://www.ncbi.nlm.nih.gov
11 www.bind.ca
12 Lincoln D. Stein, INTEGRATING BIOLOGICAL DATABASES, NATURE REVIEWS : GENETICS, 337-345, MAY 2003   DOI   ScienceOn
13 Lincoln D. Stein, Creating a bioinformatics nation. Nature, 417, 119-120, MAY 2002   DOI   ScienceOn
14 Gianni Cesareni&Mario Gimona, MINT : a Molecular INTeraction database, A. Zanzoni et al./FEBS Letters 513, 135-140, December 2001   DOI   ScienceOn
15 http://www.kegg.com
16 Shuichi Kawashima & Toshiaki Katayama & Yoko Sato & Minoru Kanehisa, A Web Service Using SOAP, WSDL to Access the KEGG System, Genome Informatics, 14, 673-674, 2003
17 http://xml.nig.ac.jp