1 |
S. Goodwin, J. D. McPherson, and W. R. McCombie, "Coming of age: ten years of next-generation sequencing technologies," Nature Review Genetics, Vol.17, No.6, pp.333-351, May 2016.
DOI
|
2 |
"Sequence Alignment/Map Format Specification", The SAM/BAM Format Specification Working Group [Internet], https://samtools.github.io/hts-specs/SAMv1.pdf
|
3 |
An introduction to Next-Generation Sequencing Technology, Illumina, Inc., [Internet], https://www.illumina.com/documents/products/illumina_sequencing_introduction.pdf
|
4 |
H. Li and R. Durbin, "Fast and accurate long-read alignment with Burrows-Wheeler transform," Bioinformatics, Vol.26, No.5, pp.589-595, 2010.
DOI
|
5 |
Faust, Gregory G., and Ira M. Hall, "SAMBLASTER: Fast Duplicate Marking and Structural Variant Read Extraction," Bioinformatics, Vol.30, No.17, pp.2503-2505, 2014.
DOI
|
6 |
H. Li, B. Handsaker, A. Wysoker, T. Fennell, J. Ruan, N. Homer, G. Marth, G. Abecasis, R. Durbin, and 1000 Genome Project Data Processing Subgroup, "The Sequence Alignment/Map format and SAMtools," Bioinformatics, Vol.25, No.16, pp.2078-2079, 2009.
DOI
|
7 |
L. Pireddu, S. Leo, and G. Zanetti, "SEAL: a distributed short read mapping and duplicate removal tool," Bioinformatics, Vol. 27, No.15, pp.2159-2160, Aug. 2011.
DOI
|
8 |
T. Nguyen, W. Shi, and D. Ruden, "CloudAligner: A fast and full-featured MapReduce based tool for sequence mapping," BMC Res Notes, Vol.4, No.1, pp.171, Jun. 2011.
DOI
|
9 |
M. C. Schatz, "CloudBurst: highly sensitive read mapping with MapReduce," Bioinformatics, Vol.25, No.11, pp.1363-1369, Jun. 2009.
DOI
|
10 |
J. M. Abuin, J. C. Pichel, T. F. Pena, and J. Amigo, "BigBWA: approaching the Burrows-Wheeler aligner to Big Data technologies," Bioinformatics, Vol.31, No.24, pp.4003-4005, 2015.
DOI
|
11 |
D. Decap, J. Reumers, C. Herzeel, P. Costanza, and J. Fostier, "Halvade: Scalable Sequence Analysis with MapReduce," Bioinformatics, Vol.31, No.15, pp.2482-2488, 2015.
DOI
|
12 |
E.-K. Byun, J. Lee, S. J. Yu, J.-H. Kwak, and S. Hwang, "Accelerating Genome Sequence Alignment on Hadoop on Lustre Environment," 2017 IEEE 13th International Conference on E-Science, pp.436-437, 2017.
|
13 |
Lustre Hadoop Plugin, Seagate [Internet], https://github.com/Seagate/lustrefs
|