Browse > Article
http://dx.doi.org/10.3745/KIPSTD.2004.11D.4.755

Development of Integrated Retrieval System of the Biology Sequence Database Using Web Service  

Lee, Su-Jung (이화여자대학교 과학기술대학원 컴퓨터학과)
Yong, Hwan-Seung (이화여자대학교 컴퓨터학과)
Publication Information
The KIPS Transactions:PartD / v.11D, no.4, 2004 , pp. 755-764 More about this Journal
Abstract
Recently, the rapid development of biotechnology brings the explosion of biological data and biological data host. Moreover, these data are highly distributed and heterogeneous, reflecting the distribution and heterogeneity of the Molecular Biology research community. As a consequence, the integration and interoperability of molecular biology databases are issue of considerable importance. But, up to now, most of the integrated systems such as link based system, data warehouse based system have many problems which are keeping the data up to date when the schema and data of the data source are changed. For this reason, the integrated system using web service technology that allow biological data to be fully exploited have been proposed. In this paper, we built the integrated system if the bio sequence information bated on the web service technology. The developed system allows users to get data with many format such as BSML, GenBank, Fasta to traverse disparate data resources. Also, it has better retrieval performance because the retrieval modules of the external database proceed in parallel.
Keywords
BioInformatics; Database; Web Services; SOAP; UDDI; WSDL;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Stein, L., 'Intergrating Biological Databases,' Nature Reviews-Genetics, Vol.4, pp.337-345, 2003
2 유성준, 김용국, 박성호, 박성희, '웹 서비스 기반 바이오 정보통합 기술 동향', 데이터베이스연구회지, 제19권 제1호, 2003
3 Frishman D, Heumann K, Lesk A, Mewes HW., Comprehensive, comprehensible, distributed and intelligent databases : current status. Bioinformatics, Vol.14, No.7, pp.551-561, Reivew, 1998   DOI   ScienceOn
4 Achard, F., G. Vaysseix and E. Barillot, 'XML, Bioinformatics and Data Integration,' Bioinformatics Review, Vol.17, No.2, pp.115-125, 2001   DOI   ScienceOn
5 Stein, L., 'Creating a Bioinformatics Nation,' Nature 417, pp.119-120, May, 2002   DOI   ScienceOn
6 정보문화사, Professional Java Web Services
7 http://www.biodas.org/, Brian King, A Web Services Description of DAS
8 http://xml.nig.ac.jp/index.html, DDBJ Project
9 Wang L, Riethoven JJ, Robinson A. XEMBL : distributing EMBL data in XML format. Bioinformatics, 8, pp.1147-1148, Aug., 2002   DOI   ScienceOn
10 Wang, L., P. Rodriguez-Tome, N. Redaschi, P. McNeil, A. J. Robinson and P. Lijnzaad., Accessing and distributing EMBL data using CORBA (common object request broker architecture), Genome Biology, Vol.1, No.5, Aug., 2002
11 Entrez online documentation, http://www.ncbi.nlm.nih.gov/Database/indexhtml
12 BioJava Tutorial, http://www.biojava.org/tutorials/index.html
13 Oracle9 i Application Server 웹 서비스 기술 백서, http://otn.oracle.co.kr/tech/webservices/pdf/webservice_twp.pdf
14 Labbook, Inc., BSML DTD and Genomic XML Viewer, http://www.labbook.com
15 GenBank : http://www.ncbi.nlm.nkh.gov/Genbank/GenbankOverview.html
16 Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank, Nucleic Acids Res, Vol.31, No.1, pp.23-27, Jan., 2003   DOI   ScienceOn
17 Wilkinson MD, Links M. BioMOBY, 'an open source biological web services proposal,' Brief Bioinform, Vol.3, No.4, pp.331-341, Dec., 2002   DOI   ScienceOn