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http://dx.doi.org/10.3745/KIPSTD.2003.10D.1.133

SCOPML and SCOPBrowser  

Ahn, Geon-Tae (울산대학교 컴퓨터정보통신공학부)
Yoon, Hyeong-Seok (울산대학교 컴퓨터정보통신공학부)
Hwang, Eui-Yoon (울산대학교 컴퓨터정보통신공학부)
Kim, Jin-Hong (울산대학교 컴퓨터정보통신공학부)
Lee, Myung-Joon (울산대학교 컴퓨터정보통신공학부)
Publication Information
The KIPS Transactions:PartD / v.10D, no.1, 2003 , pp. 133-142 More about this Journal
Abstract
The major challenge for post-genomic study is to identify structural similarity and relationships of proteins. SCOP (Structural Classification of Proteins) is a typical database for this purpose, providing a derailed description of the structural and functional relationships of the proteins whose three-dimensional structures have been determined. Unfortunately, since the SCOP data is only available as a plain text format, it is cumbersome and error-prone to develop tools and resources to utilize the data more effectively. To meet these researchers to utilize the data more effectively. To meet these requirements, we have developed an XML representation for the SCOP site, users of the tool, named, SCOPBrowser, for effective search of SCOP database. In addition to the information available from the SCOP site, users of the tool can obtain various information such as viewing the tree hierarchy of structure classification of proteins, searching into whole protein domains, showing XML contents of a specific domain, and some useful statistics about protein structures.
Keywords
SCOPML; SCOPBrowser; Protein Domain; SCOP; XML;
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