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http://dx.doi.org/10.3745/KIPSTA.2009.16-A.3.153

The Study of Protein Structure Visualization and Rendering Speed Using the Geometry Instancing  

Park, Chan-Yong (한국전자통신연구원)
Hwang, Chi-Jung (충남대학교 전기정보통신공학부)
Abstract
Analysis of 3-dimensional (3D) protein structure plays an important role of structural bioinformatics. The protein structure visualization is the one of the structural bioinformatics and the most fundamental problem. As the number of known protein structure increases rapidly and the study of protein-protein interaction is prevalent, the fast visualization of large scale protein structure becomes essential. The fast protein structure visualization system we proposed is sophisticated and well designed visualization system using geometry instancing technique. Because this system is optimized for recent 3D graphics hardware using geometry instancing technique, its rendering speed is faster than other visualization tools.
Keywords
Computer Graphics; Bioinformatics; Protein Structure Visualization;
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1 W. Kabsch and C. Sander, 'DSSP: definition of secondary structure of proteins given a set of 3D coordinates,' Biopolymers, Vol.22, pp.2577-2637, 1983. (http://swift.cmbi.ru.nl/gv/dssp/)   DOI   ScienceOn
2 M. Carson and C.E. Bugg, 'Algorithm for Ribbon Models of Proteins,' Journal of Molecular Graphics, Vol.4, No.2, pp.121-122, June, 1986   DOI   ScienceOn
3 M. L. Connolly, 'Analytical molecular surface calculation,' Journal of Applied Crystallography, vol.16, No.5, pp.548. 558, Oct., 1983   DOI
4 http://local.wasp.uwa.edu.au/~pbourke/geometry/ polygonise/
5 http://pymol.org/
6 http://jmol.sourceforge.net/
7 R. Peter, J. George, M. Kenneth, L. Jonathan, S. Susan, 'Biology,' 8th ED. McGraw-Hill, 2007
8 H. William, D. Andrew, and S. Klaus, 'VMD - Visual Molecular Dynamics,' Journal of Molecular Graphics, Vol.14, pp.33-38, 1996.(http://www.ks.uiuc.edu/Research/vmd/)   DOI   ScienceOn
9 http://www.accelrys.com/
10 E.F. Pettersen, T.D. Goddard, C.C. Huang, G.S. Couch, D.M. Greenblatt, E.C. Meng and T.E. Ferrin, 'UCSF Chimera - A Visualization System for Exploratory Research and Analysis,' Journal of Computational Chemistry, Vol.25, No.13, pp.1605-1612, 2004   DOI   ScienceOn
11 L. Laurence, T. Annick, B. Robert, 'Analysis of accessible surface of residues in proteins,' Protein Science, Vol.12, No.7, pp.1406-1417, 2003   DOI   ScienceOn
12 A.M. Lesk and K.D. Hardman, 'Computer-generated schematic diagrams of protein structures,' Science, Vol.216, pp.539-540, 1982   DOI