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http://dx.doi.org/10.13047/KJEE.2015.29.5.693

Molecular identification and Phylogenetic relationship of the rook (Corvus frugilegus) population in Jeju-do Province, South Korea  

Han, Sang-Hyun (Faculty of Science Education, Jeju National Univ.)
Kim, Tae-Wook (Faculty of Science Education, Jeju National Univ.)
Kim, Yoo-Kyung (Faculty of Science Education, Jeju National Univ.)
Park, Jun-Ho (Faculty of Science Education, Jeju National Univ.)
Kim, Dong-Min (Faculty of Science Education, Jeju National Univ.)
Adhikari, Preadeep (Faculty of Science Education, Jeju National Univ.)
Park, Su-Gon (Faculty of Science Education, Jeju National Univ.)
Park, Seon-Mi (Faculty of Science Education, Jeju National Univ.)
Kim, Ga-Ram (Faculty of Science Education, Jeju National Univ.)
Lee, Jun-Won (Faculty of Science Education, Jeju National Univ.)
Oh, Hong-Shik (Faculty of Science Education, Jeju National Univ.)
Publication Information
Korean Journal of Environment and Ecology / v.29, no.5, 2015 , pp. 693-702 More about this Journal
Abstract
In order to identify the species and to reveal the phylogenetic relationship of rook populations found in Jeju-do Province in winter seasons, we determined the sequences of mitochondrial cytochrome c oxidase I (COI) gene and analyzed the genetic structure of maternal lineages and phylogenetic relationship. The rook DNAs were isolated from the post-mortem specimens and plumages collected from agricultural farms in Jeju-do Province including U-do Island. The obtained COI sequences (n=41) showed over 97.0% identities with those previously reported from Corvus frugeligus. Three COI haplotypes (J01-J03) were detected from COI sequences of the rooks obtained in Jeju-do Province but those did not show the site-specific patterns, showing that they might be derived from a common maternal origin. Eight maternal haplotypes were detected from all COI sequences obtained. Among those three haplotypes contained the COI sequences from Northeast Asia including eastern Russia, Mongolia and South Korea. On the other hand, the other five haplotypes contained the COI sequences reported from Central Asia, Middle East, western Russia and European countries. The COI sequences from Jeju-do Province were located on three haplotypes (CF01-CF03) belonging to Northeast Asian rook lineages. The NJ tree showed the distinct branch patterns suggesting two different maternal lineages of C. frugilegus, which proposed as two parapatric subspecies, C. f. frugilegus (Western) and C. f. pastinator (Eastern). These findings using DNA barcoding approaches will be contributed to provide the information about avian fauna for understanding the genetic structure of maternal lineage, phylogenetic relationship and their molecular ecology.
Keywords
MATERNAL LINEAGE; COI; GENETIC STRUCTURE; MOLECULAR ECOLOGY;
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Times Cited By KSCI : 5  (Citation Analysis)
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