Isolation of dhlA Gene Responsible for Degradation of 1, 2-dichloroethane from Metagenomic Library Derived from Daecheong Reservoir |
Kang, Cheol-Hee
(Department of Microbiology, Chungbuk National University)
Moon, Mi-Sook (Department of Microbiology, Chungbuk National University) Song, Ji-Sook (Department of Microbiology, Chungbuk National University) Lee, Sang-Mhan (Department of Life Science, Chongju University) Kim, Chi-Kyung (Department of Microbiology, Chungbuk National University) |
1 | Amann, R.I., W. Ludwig and K.-H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59: 143-169 |
2 | Bergman, J.G. and J. Sanik. 1957. Determination of trace amounts of chloride in naphtha. Anal. Chem. 29: 241- 243 DOI |
3 | Janssen, D.B., F. Pries, J. Van Der Ploeg, B. Kazemier, P. Terpstra and B. Witholt. 1989. Cloning of 1, 2-dichloroethane degradation genes of Xanthobacter autotrophicus GJ10 and expression and sequencing of the dhlA gene. J. Bacteriol. 171: 6791-6799 |
4 | Kim, U.J., H. Shizuya, P.J. de Jong, B. Birren and M.I. Simon. 1992. Stable propagation of cosmid sized human DNA inserts in an F factor based vector. Nucleic Acids Res. 20: 1083-1085 DOI ScienceOn |
5 | Kulakova, A.N., M.J. Larkin and L.A. Kulakov. 1997. The plasmid-located haloalkane dehalogenase gene from Rhodococcus rhodochrous NCIMB 13064. Microbiology 143: 109-115 DOI ScienceOn |
6 | Newman, J., T.S. Peat, R. Richard, L. Kan, P.E. Swanson, J.A. Affholter, I.H. Holmes, J.F. Schindler, C.J. Unkefer and T.C. Terwilliger. 1999. Haloalkane dehalogenases: structure of a Rhodococcus enzyme. Biochem. 38: 16105-16114 DOI ScienceOn |
7 | Poelarends, G.J., L.A. Kulakov, M.J. Larkin, J.E. van Hylckama Vlieg, and D.B. Janssen. 2000. Roles of horizontal gene transfer and gene integration in evolution of 1,3-dichloropropene- and 1, 2-dibromoethanedegradative pathways. J. Bacteriol. 182: 2191-2199 DOI ScienceOn |
8 | Song, J.S., D.H. Lee, K. Lee and C.K. Kim. 2004. Genetic organization of the dhlA gene encoding 1, 2-dichloroethane dechlorinase from Xanthobacter flavus UE15. J. Microiol. 42: 188-193 |
9 | Staley, J.T. and A. Konopka. 1985. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu. Rev. Microbiol. 39: 321-346 DOI ScienceOn |
10 | Jones, J.G. 1977. The effect of environmental factors on estimated viable and total populations of planktonic bacteria in lakes and experimental enclosures. Freshwater Biol. 7: 67-91 DOI |
11 | Poelarends, G.J., J.E. van Hylckama Vlieg, M.J. Larkinand, L.M. Freitas Dos Santos and D.B. Janssen. 1999. Degradation of 1, 2-dibromoethane by Mycobacterium sp. Strain GP1. J. Bacteriol. 181: 2050-8 |
12 | Rhocelle, P.A., J.C. Fry, R.J. Parkes and A.J. Weightman. 1992. DNA extraction for 16S rRNA gene analysis to determine genetic diversity in deep sediment communities. FEMS. Microbiol. Lett. 79: 59-65 |
13 | Marsh, T.L. 1999. Terminal Restriction Fragment Length Polymorphism (T-RFLP); an emerging method for characterizing diversity among homologous populations of amplification products. Curr. Opin. Microbiol. 2: 323-327 DOI PUBMED ScienceOn |
14 | Hanahan, D. and M. Meselson. 1980. Plasmid screening at high colony density. Gene 10: 63-67 DOI ScienceOn |
15 | Wagner, M., R. Erhart, W. Manz, R. Amann, H. Lemmer, D. Wedi and K.H. Schleifer. 1994. Development of an rRNA-targeted oligonucleotide probe specific for the genus Acinetobacter and its application for in situ monitoring in activated sludge. Appl. Environ. Microbiol. 60: 792-800 |
16 | Moon, M.S., D.H. Lee and C.K. Kim. 2004. Identification of the bphC gene for meta-cleavage of aromatic pollutants from a metagenomic library derived from lake waters. Biotechnol. Bioprocess. Eng. 9: 393-399 DOI ScienceOn |
17 | Pernthaler, J., F.O. Glockner, S. Unterholzner, A. Alfreider, R. Psenner and R. Amann. 1998. Seasonal community and population dynamics of pelagic bacteria and archaea in a high mountain lake. Appl. Environ. Microbiol. 64: 4299-4306 |
18 | Rondon, M.R., P.R. August, A.D. Bettermann, S.F. Brady, T.H. Grossman, M.R. Liles, K.A. Loiacono, B.A. Lynch, I.A. MacNeil, C. Minor, C.L. Tiong, M. Gilman, M.S. Osburne, J. Clardy, J. Handelsman and R.M. Goodman. 2000. Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Micobiol. 66: 2541-2547 DOI ScienceOn |
19 | Tosvik, V., J. Goksoyr and F.L. Daae. 1990. High diversity of DNA of soil bacteria. Appl. Environ. Microbiol. 56: 782-787 |
20 | Janssen, D.B., J.E. Oppentocht and G.J. Poelarends. 2001. Microbial dehalogenation. Curr. Opin. Biotechnol. 12: 254-258 DOI ScienceOn |
21 | Thompson, J.D., D.G. Higgins and T.J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:4673-4680 DOI ScienceOn |
22 | Thompson, J.D., T.J. Gibson, F. Plewniak, F. Jeanmougin and D.G. Higgins. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 24:4876-4882 |
23 | Kogure, K., U. Simidu and N. Taga. 1979. A tentative direct microscopic method for counting living marine bacteria. Can. J. Microbiol. 25: 415-420 DOI ScienceOn |
24 | Lee, M.S. 2002. Molecular biological analysis of bacterial community and metagenome library construction from sunchon bay. M. S. thesis, Chungbuk National University |
25 | Weisse, T. 1992. The microbial food web and its sensitivity to eutrophication and contaminant enrichment; a cross -system overview. Int. Rev. ges. Hydrobiol. 76: 327- 337 DOI |
26 | Janssen, D.B., A. Scheper, L. Dijkhuizen and B. Witholt. 1985. Degradation of halogenated aliphatic compounds by Xanthobacter autotrophicus GJ10. Appl. Environ. Microbiol. 49: 673-677 |
27 | Wagner, M., R. Amann, H. Lemmer and K.H. Schleifer. 1993. Probing activated sludge with proteobacteriaspecific oligonucleotides: inadequacy of culture-dependent methods for describing microbial community structure. Appl. Environ. Microbiol. 59: 1520-1525 |
28 | Bintrim S.B., T.J. Donohue, J. Handelsman, G.P. Roberts and R.M. Goodman. 1997. Molecular phylogeny of Archaea from soil. Proc. Nat. Acad. Sci. USA 94: 277- 282 DOI ScienceOn |
29 | Lee, D.H., S.A. Noh and C.K. Kim. 2000. Development of molecular biological methods to analyze bacterial species diversity in freshwater and soil ecosystems. J. Microbiol. 38: 11-17 |
30 | Sambrook, J., E. Fritsch and T. Maniatis. 1989. Molecular cloning: A Laboratory Manual. 2nd ed., Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA |
31 | Sanger, F., S. Nicklen and A.R. Coulson. 1977. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467 DOI ScienceOn |
32 | Kogure, K., U. Simidu and N. Taga. 1980. Distribution of viable marine bacteria in neritic seawater around Japan. Can. J. Microbiol. 26: 318-323 DOI ScienceOn |
33 | Wagner, M. and A. Loy. 2002. Bacterial community composition and function in sewage treatment systems. Curr. Opin. Biotechnol. 13: 218-227 DOI ScienceOn |
34 | Ferguson, R.L., E.N. Buckley and A.V. Palumbo. 1984. Response of marine bacteriolplankton to differential filtration and confinement. Appl. Environ. Microbiol. 47: 49-55 |
35 | Fetzner, S. and F. Lingens. 1994. Bacterial dehalogenase: biochemistry, genetics, and biotechnological applications. Microbiol. Rev. 58: 641-685 |