Detection of Rhizina undulata in Soil by Nested-PCR Using rDNA ITS-specific Primer |
Lee, Sun Keun
(Department of Forest Resources Protection, College of Forest and Environmental Sciences, Kangwon National University)
Lee, Jong Kyu (Department of Forest Resources Protection, College of Forest and Environmental Sciences, Kangwon National University) Lee, Seung Kyu (Division of Forest Insect Pests and Disease, Korea Forest Research Institute) Kim, Kyung Hee (Division of Forest Insect Pests and Disease, Korea Forest Research Institute) Lee, Sang Yong (Department of Forest Resources Protection, College of Forest and Environmental Sciences, Kangwon National University) |
1 | Hayasaki, M., Toshinobu, M. and Leggett, J.M. 2001. Intraspecific variation of 18S-5.8S-26S rDNA sites revealed by FISH and RFLP in wild oat, Avena agadiriana. Genes and Genetic Systems 76: 9-14 DOI ScienceOn |
2 | Jaeger, E.E.M., Carroll, N.M., Choudhury, S., Dunlop, A.A.S., Towler, H.M.A., Matheson, M.M., Adamson, P., Okahravi, N. and Lightman, S. 2000. Rapid detection and identification of Candida, Aspergillus, and Fusarium species in ocular samples using nested PCR. Journal of Clinical Microbiology 38: 2902-2908 |
3 | Lee, S.K., Lee, J.K., Kim, K.H., Lee, S.K. and Lee, S.Y. 2007. PCR detection and sequence analysis of the rDNA ITS regions of Rhizina undulata. Journal of Korean Forest Society 96: (in press) |
4 | Murray, J.S. and Young, C. 1961. Group dying of conifers. Forestry Commission Forest Record No. 46. 19pp |
5 | Sato, K., Yokozawa, Y. and Shoji, T. 1974. Studies on Rhizina root rot causing group dying of pine trees. Bulletin of the Government Forest Experiment Station 268: 13-48 |
6 | Sugita, T., Nakajima, M., Ikeda, R., Niki, Y., Matsushima, T. and Shinoda, T. 2001. A nested PCR assay to detect DNA in sera for the diagnosis of deep-seated Trichosporonosis. Microbiology and Immunology 45: 143-148 DOI |
7 | White, P.L., Barton, R., Guiver, M., Linton, C.J., Wilson, S., Smith, M., Gomez, L.B., Carr, M.J., Kimmitt, P.T., Seaton, S., Rajakumar, K., Holyoake, T., Kibbler, C.C., Johnson, E., Hobson, R.P., Jones, B. and Barnes, R.A. 2006. A consensus on fungal polymerase chain reaction diagnosis? A United Kingdom-Ireland evaluation of polymerase chain reaction methods for detection of systemic fungal infections. Journal of Molecular Diagnostics 8(3): 376-384 DOI ScienceOn |
8 | White, T.J., Bruns, T. Lee, S. and Taylor, J. 1990. Ampilification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In : PCR Protocols by M.A. Innis, D.H. Gelfand, J.J. Snisky & T.J. White, eds., p.315-322. Academic Press, London |
9 | Lee, I.M., Lukaesko, L.A. and Maroon, C.J.M. 2001. Comparison of dig-labeled PCR, nested PCR, and ELISA for the detection of Clavibacter michiganensis subsp. sepedonicus in field-grown potatoes. Plant Disease 85: 261-266 DOI ScienceOn |
10 | Ranjard, L., Poly, F., Lata, J.C., Mougel, C., Thioulouse, J. and Nazaret, S. 2001. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability. Applied and Environmental Microbiology 67: 4479-4487 DOI |
11 | Lee, S.Y. and Kim, W.K. 1990. Studies on Rhizina root rot disease of Pinus densiflora : Physiological characteristics and pathogenicity of Rhizina undulata. Journal of Korean Forest Society 79: 322-329 |
12 | Lee, J.K., Lee, S.Y, Lee, S.J. and Kim, K.H. 2005. Fruiting body development of a root pathogenic fungus, Rhizina undulata, after forest fire in eastern coastal pine forests of Korea. Forest Research 1: 33-37 |
13 | Zinno, T. and Shoji, T. 1981. Studies on Rhizina root rot of pine trees(II). Relation between occurrence of the disease and detection of the causal fungus in soil. Proceedings of the 92nd Meeting of the Japanese Forest Society. p.399-400 |
14 | Jacquot, E., van Tuinen, D., Gianinazzi, S. and Gianinazzi-Pearson, V. 2000. Monitoring species of arbuscular mycorrhizal fungi in plant and soil by nested PCR : application to the study of the impact of sewage sludge. Plant and Soil 226: 179-188 DOI |
15 | Robert, E. and Farrell, Jr. 2005. RT-PCR In : RNA methodologies. A laboratory guide for isolation and characterization (3rd. edition). p.478-481. Elsevier Academic Press, USA |
16 | Cullen S.W. and Hirsch P.R. 1998. Simple and rapid method for direct extraction of microbial DNA from soil for PCR. Soil Biology and Biochemistry 30: 983-993 DOI ScienceOn |
17 | Kageyama, K., Komatsu, T. and Suga, H. 2003. Refilled PCR protocol for detection of plant pathogens in soil. The Phytopathological Society of Japan 69: 153-160 |
18 | Lu, L., Li, J. and Cang, Y. 2002. PCR-based sensitive detection of dedicinal fungi Hericium species from ribosomal internal transcribed spacer(ITS) sequences. Pharmaceutical Society of Japan 25: 975-980 |
19 | Jung, J.S., Han, H.S, Jo, Y.S. and Koh, Y.J. 2003. Nested PCR detection of Pseudomonas syringae pv. actinidiae, the causal bacterium of kiwifruit canker. Research in Plant Disease 9: 116-120 DOI |
20 | Binnicker, M.J., Buckwalter, S.P., Eisberner, J.J., Stewart, R.A., McCullough, A.E., Wohlfiel, S.L. and Wengenack, N.L. 2007. Detection of Coccidioides species in clinical specimens by real-time PCR. Journal of Clinical Microbiology 45: 173-178 DOI ScienceOn |
21 | Porteus, L.A., Armstrong, J.L., Seidler, R.J. and Watrud, L.S. 1994. An effective method to extract DNA from environmental samples for polymerase chain reaction amplification. Journal of Applied Bacteriology 74: 78-85 |
22 | Chiang, Y.C., Chou, C.H., Lee, P.R. and Chiang, T.Y. 2001. Detection of leaf-associated fungi based on PCR and nucleotide sequence of the ribosomal internal transcribed spacer (ITS) in Miscanthus. Botanical Bulletin of Academia Sinica 42: 39-44 |
23 | Chao, C.C., Lee, J.T. and Tsung, C.C. 2004. Identification of clinically relevant Viridans group Streptococci by sequence analysis of the 16s-23s ribosome DNA spacer region. Journal of Clinical Microbiology 42: 2651-2657 DOI ScienceOn |
24 | Lundquist, J.E. 1984. The occurrence and distribution of Rhizina root rot in South Africa and Swaziland. The South African Journal of Sociology 131: 22-24 |
25 | Egger, K.N. 1996. Molecular systematics of E-strain mycorrhizal fungi: Wilcoxina and its relationship to Tricharina (Pezizales). Canadian Journal of Botany 74: 773-779 DOI |
26 | Norman, J.E. and Egger, K.N. 1996. Phylogeny of the genus Plicaria and its relationship to Peziza inferred from ribosomal DNA sequence analysis. Mycologia 88: 986-995 DOI |
27 | Kikuchi, K., Matsushita, N., Guerin-Laguette, A., Ota A. and Suzuki, K. 2000. Detection of Tricholoma matsutake by specific ITS primers. Mycological Research 104: 1427-1430 DOI ScienceOn |
28 | Kreader, C.A. 1996. Relief of amplification inhibition in PCR with bovine serum albumin of T4 gene 32 protein. Applied and Environmental Microbiology 62: 1102-1106 |
29 | George, M.S., Johanne M. and Paul M.K. 2000. Genetic similarity among Cercospora apii - group species and their detection in host plant tissue by PCR/RFLP analyses of the rDNA internal transcribed spacer (ITS). The Journal of General and Applied Microbiology 46: 69-78 DOI ScienceOn |
![]() |