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Wikipedia, http://en.wikipedia.org/wiki/Haplotype.
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A. Graça, I. Lynce, J. Marques-Silva, and A.L. Oliveira, "Haplotype inference by Pure Parsimony: a survey," J Bioinform Comput Biol, vol. 17, pp. 969-992, 2010.
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S. R. Browning and B. L. Browning, "Haplotype phasing: existing methods and new developments," Nature Reviews Genetics, vol. 12, pp. 703-714, 2011.
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G. Lancia, M. C. Pinotti, and R. Rizzi, "Haplotyping populations by pure parsimony: Complexity of exact and approximation algorithms," Informs Journal on Computing, vol.6 pp.348-359, 2004.
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A. Graça, Satisfiability-based Algorithms for Haplotype Inference, Ph.D. Thesis, Technical University of Lisbon, 2011.
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E. Irurozki, B. Calvo, and J. A. Lozano, "A preprocessing procedure for haplotype inference by pure parsimony," IEEE/ACM Trans Comput Biol Bioinform, vol.8 pp.1183- 1195, 2011.
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M.-H. Choi, S.-H. Kang and H.-S. Lim, "A New Preprocessing Algorithm for Haplotype Inference: Reducing the Number of Candidate Haplotypes by Using Inclusion Relations between Groups of Haplotypes," J Bioinform Comput Biol, in progress.
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D. Gusfield, and S. H. Orzack, Haplotype inference, In: Aluru S (ed), Handbook on Bioinformatics, CRC Press, Boca Raton, pp. 1-28, 2005.
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A. Makhorin, GLPK (GNU Linear Programming Kit), http://www.gnu.org/software/glpk/
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A. Graca, J. Marques-Silva, I. Lynce, and A. L. Oliveira, "Haplotype inference with pseudo-Boolean optimization," Ann Oper Res vol. 184, pp. 137-162, 2011.
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