Browse > Article

Bio-Gateway System Architecture for Integrating Heterogeneous Bio-Databases  

Jung, Jin-Hee (한국생명공학연구원 국가유전체 정보센터, 목포대학교)
Jung, Min-A (한국생명공학연구원 국가유전체 정보센터, 목포대학교)
Abstract
The Integration of biological databases is critically important because of the interconnectedness of biological research. But it's not easy to integrate these databases for the different formats and designers in heterogeneous environments. So initial design is indispensable to integrate heterogeneous databases. In this paper, after we performed conceptual modeling on a popular nucleotide database, GenBank and a protein database, Swiss-Prot and integrated them by considering cross-reference. we also propose the integration system architecture called Bio-Gateway System, which can help users query closely linked information between two biological databases within one system differently from existing systems as well as query easily on condition that user knows fine condition for less effort.
Keywords
바이오 데이터베이스 통합;ER 모델;개념적 설계;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Andres D.Baxevanis ' The Molecular Biology Database Collection : an online compilation of relevant database resources ' oxford university press2000
2 Okayama, T.,Tamura, T., Gohobori,T., Ikeo, K., Miyazaki,S., Fukami-Kobayashi, K. and Sugawara,H. 'Formal design and implementation of an improved DDBJ database with a new object-oriented library.' Bioinformatics
3 Chen,P.S. ' The Entity-Relationship Model:Toward a Unified View of Data'. ACM trans. Database sys
4 Baker,P., Brass,A., Bechhofer,S., Goble,C., Paton, N. and Stevens,R :TAMBIS-transparent access to multiple biological information sources. In proceedings of International Conference on Intelligent Systems for Molecular Biology. AAAI Press
5 T.Etzold , A.Ulyanov, and P.Argos : SRS: Information Retrieval System for Molecular Biology Data Banks, Methods in Enzmemolog 226(1996)
6 T.Etzold and P.Argos : SRS an indexing and retrieval tool for flat file data libraries, Appl. Biosci(1993) 49-57
7 Chen, I. M.A.,Kosky, A., Markowitz,V. and Szeto,E. : Constructing and maintaining scientific database views in the frame work of the Object Protocol Model. In Proceedings of SSDBM. IEEE Press
8 Norman W. Paton, Shakeel A. Khan, Andrew Hayes, Fouzia Moussouni, Andy Brass, Karen Eilbeck, Carole A. Goble, Simon J. Hubbard and Stephen G. Oliver ' Conceptual modeling of genomic information' Bioinformatics 2000
9 J.Hammer, H.Garcia-Molina, J.Cho, R.Aranha, and A.Crespo : Extracting Semistructured Information from the Web, Workshop on Management of Semistructured Data(1997)
10 S.Davidson, C.Overton, V. Tannen, and L.Wong : Biokleisli : A digital library for biomedical researchers, Journal of Digital Libraries (1996)
11 N.Ashish and C.Knoblock : Wrapper Generation for Semi-Structured Internet Sources, Workshop on Management of Semistructured Data(1997)
12 A.Y.Levy, A.Rajarman, and J.J.Ordille : Querying Heterogeneous Information Sources Using Source Descriptions , Proc. Of the 22nd Conf. On Very Large Data Bases(VLDB'96
13 KH Cheung, PM Nadkarni and DG Shin 'A metadata approach to query interoperation between molecular biology databases' Bioinformatics 1998