Organic Matter Cycle by Biogeochemical Indicator in Tidal Mud Flat, West Coast of Korea |
Lee, Dong-Hun
(Marine Environments & Conservation Research Division, KIOST)
Lee, Jun-Ho (Marine Environments & Conservation Research Division, KIOST) Jeong, Kap-Sik (Marine Environments & Conservation Research Division, KIOST) Woo, Han Jun (Marine Environments & Conservation Research Division, KIOST) Kang, Jeongwon (Marine Environments & Conservation Research Division, KIOST) Shin, Kyung-Hoon (Department of Marine Sciences and Convergent Technology, College of Science and Technology Hanyang University) Ha, Sun-Yong (Korea Polar Research Institute, KIOST) |
1 | Nott CJ, Xie SC, Avsejs LA, Maddy D, Chambers FM, Evershed RP (2000) n-Alkane distributions in ombrotrophic mires as indicators of vegetation change related to climatic variation. Org Geochem 31:231-235 DOI ScienceOn |
2 | Alongi DM (1995) Decomposition and recycling of organic matter in muds of the Gulf of Papua, northern Coral Sea. Cont Shelf Rea 15:1319-1337 DOI ScienceOn |
3 | Bin L, Van Verseveld HW, Roling WFM (2002) Microbial aspect of anaerobic BTEX degradation. Biomed Environ Sci 15:130-144 |
4 | Beller HR, Grbic-Gaic D, Reinhard M (1992) Microbial degradation of toluene under sulfate-reducing conditions and the influence on iron on the process. Appl Environ Microbiol 50:786-793 |
5 | Blumenberg M, Seifert R, Reitner J, Pape T, Michaelis W (2004) Membrane lipid patterns typify distinct anaerobic methanotrophic consortia. P Natl Acad Sci Usa 101: 11111-11116 DOI ScienceOn |
6 | You OR, Mok JS, Kim SH, Choi DL, Hyun JH (2010) Comparison of sulfate reduction rates associated with geochemical characteristics at the continental slope and basin sediments in the Ulleung Basin, East Sea. Ocean and Polar Res 32(3):299-307 (in Korean) 과학기술학회마을 DOI ScienceOn |
7 | Thiel V, Peckmann J, Seifert R, Wehrung P, Reitner J, Michaelis W (1999) Highly isotopically depleted isoprenoids: molecular markers for ancient methane venting. Geochim Cosmochim Ac 63:3959-3966 DOI ScienceOn |
8 | Volkman JK, Holdsworth DG, Neill GP, Bavor Jr HJ (1992) Identification of natural, anthropogenic and petroleum hydrocarbons in aquatic sediments. Sci Total Environ 112:203-219 DOI ScienceOn |
9 | Yang JY, Chung KH, Jin YK, Shin KH (2011) Characterizing lipid biomarkers in methanotrophic communities of gas hydrate-bearing sediments in the Sea of Okhotsk. Mar Pet Geol 28:1884-1898 DOI ScienceOn |
10 | Weiner JM, Lovley DR (1998) Anaerobic benzene degradation in petroleum-contaminated aquifer sediments after inoculation with a benzene-oxidizing enrichment. Appl Environ Microbiol 64:775-778 |
11 | Madigan MT, Martinko JM, Parker J (2003) Brock Biology of Microorganisms, 10th edn. Pearson Education Inc., Upper Saddle River, NJ, 1152 p |
12 | Martens CS, Berner RA (1974) Methane production in the interstitial waters of sulfate depleted marine sediments. Science 185:1167-1169 DOI ScienceOn |
13 | Maslen E, Grice K, Gale JD, Hallmann C, Horsfield B (2009) Crocetane: A potential marker of photic zone euxinia in thermally mature sediments and crude oils of Devonian age. Org Geochem 40:1-11 DOI ScienceOn |
14 | Pancost RD, Hopmans EC, Sinninghe Damste JS (2001) The MEDINAUT Ship board Scientific Party. Archaeal lipids in Mediterranean cold seeps: molecular proxies for anaerobic methane oxidation. Geochim Cosmochim Ac 65:1611-1627 DOI ScienceOn |
15 | Prahl FG, Ertel JR, Goni MA, Sparrow MA, Eversmeyer, B (1994) Terrestrial organic carbon contributions to sediments on the Washington margin. Geochim Cosmochim Ac 58:3035-3048 DOI ScienceOn |
16 | Rooney-Varga JN, Anderson RT, Fraga JL, Ringelberg D, Lovley DR (1999) Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer. Appl Environ Microbial 65:3056-3063 |
17 | Samiullah Y (1985) Biological Effects of Marine Oil Pollution. Oil Petrochem Pollut 2:235-264 DOI |
18 | Stevenson FJ, Cheng CN (1972) Organic geochemistry of the Argentine Basin sediments; Carbon-nitrogen relationships and quaternary correlations. Geochim Cosmochim Ac 36:653-671 DOI ScienceOn |
19 | Silliman JE, Meyers PA, Bourbonniere RA (1996) Record of postglacial organic matter deliverly and burial in sediments of Lake Ontario. Org Geochem 24:443-472 |
20 | St-Onge G, Hillaire-Marcel C (2001) Isotopic constraints of sedimentary inputs and organic carbon burial rates in the Saguenay Fjord, Quebec. Mar Geol 176:1-22 DOI ScienceOn |
21 | Thamdrup B, Canfield DE (1996) Pathways of carbon oxidation in continental margin sediments off central Chile. Limnol Oceanogr 41(8):1629-1650 DOI ScienceOn |
22 | Thamdrup B (2000) Bacterial manganese and iron reduction in aquatic sediments. Adv Microbial Ecology 16:41-84 DOI |
23 | Wilms R, Sass H, Kolpke B, Cyponka H, Engelen B (2007) Methane and sulfate pro¢leswithin the subsurface of a tidal flat are reflected by the distribution of sulfatereducing bacteria and methanogenic archaea. FEMS Microbiol Ecol 59:611-621 DOI ScienceOn |
24 | Woo HJ, Choi JU, Ryu JH, Choi SH, Kim SR (2005) Sedimentary environments in the hwangdo tidal flat Cheonsu bay. J Korean Wet Soc 7(2):53-67 (in Korean) |
25 | Oremland RS, Polcin S (1982) Methanogenesis and sulphate reduction: competitive and non-competitive substrates in estuarine sediments. Appl Environ Microbiol 44:1270-1276 |
26 | Hyun JH, Mok JS, Cho HY, Kim SH, Lee KS, Kostka, JE (2009) Rapid organic matter mineralization coupled to iron cycling in intertidal mud flats of the Han River estuary, Yellow Sea. Biogeochem 92:231-245 DOI ScienceOn |
27 | KIOST (2011) Environmental assessment of oil spill and environmental restoration research. Korea Institute of Ocean Science & Technology, 37 p (in Korean) |
28 | Koster IW, Rinezema A, de Vegt AL, Lettinga G (1986) Sulfide inhibition of methanogenic activity of granular sludge at various pH-levels. Wat Res 20:1561-1567 DOI ScienceOn |
29 | Lambert SM (1967) Functional relationship between sorption in siol and chemical structure. J Agric Food Chem. 15: 572-576 DOI |
30 | Lee DH, Kim JH, Bahk JJ, Cho HY, Hyun JH, Shin KH (2013) Geochemical signature related to lipid biomarkers of ANMEs in gas hydrate-bearing sediments in the Ulleung Basin, East Sea (Korea). Mar Petrol Geol 47:125-135 DOI ScienceOn |
31 | Holmer M, Wildish D, Hargrave B (2005) Organic enrichment from marine finfish aquaculture and effects on sediment biogeochemical processes. In: Barcelo, Damia, Kostianoy, Andrey G (eds) The Handbook of Environmental Chemistry, Vol. 5. Springer, New York, pp 181-206 |
32 | Hyun JH, Kim KH, Kwon KK, Lee JH, Lee HK, Kim SJ, Kim KH (2002) Total microbial biomass measured by ATP in three marine sedimentary environments. Korean J Microbiol 38:119-126 (in Korean) 과학기술학회마을 |
33 | Hyun JH, Mok JS, Cho HY, Cho BC, Choi JK (2004) Anaerobic mineralization of organic matter and sulfate reduction in summer at Ganghwa intertidal flat, Korea. J Korean Wet Soc 6:132 (in Korean) |
34 | Jahnke C (1995) Quantifying the role of heterotrophic bacteria in the carbon cycle: A need for respiration rate measurements. Limnol Oceanogr 40:436-441 DOI ScienceOn |
35 | Jhonston R (1970) The decomposition of crude oil residence in sand columns. J Mar Biol Ass UK 50:925-937 DOI |
36 | Jorgensen BB (1982) Mineralization of organic matter in the sea bed-the role of sulphate reduction. Nature 96:643-645 |
37 | Freudenthal T, Wagner T, Wenzhofer F, Zabel M, Wefer G (2001) Early diagenesis of organic matter from sediments of the eastern subtropical Atlantic: evidence from stable nitrogen and carbon isotopes. Geochim Cosmochim Ac 65:1795-1808 DOI ScienceOn |
38 | Kaneko M, Shingai H, Pohlman JW, Naraoka H (2010) Chemical and isotopic signature of bulk organic matter and hydrocarbon biomarkers within mid-slope accretionary sediments of the northern Cascadia margin gas hydrate system. Mar Geol 275:166-177 DOI ScienceOn |
39 | Kaneko M, Naraoka H, Takano Y, Ohkouchi N (2013) Distribution and isotopic signatures of archaeal lipid biomarkers associated with gas hydrate occurrences on the northern CascadiaMargin. Chem Geol 343:76-84 DOI ScienceOn |
40 | Kim YS (1989) The sedimentology of Holocene intertidal deposits in Cheonsu Bay, west coast of Korea. Jour. Korean Earth Science Society 10(1):134-151 (in Korean) |
41 | Ensely BD, Suflita JM (1995) Metabolism of environmental contaminations by mixed and pure cultures of sulfatereducing bacteria. In: Barton LL (ed) Sulfate-Reducing. Plenum Press, New York, pp 293-332 |
42 | Feio MJ, Beech IB, Carepo M, Lopes JM, Cheung CWS, Franco R, Guezennec J, Smith JR, Mitchell JI, Moura JJG, Lino AR (1998) Isolation and characterisation of a novel sulphate-reducing bacterium of the Desulfovibrio Genus. Anaerobe 4:117-130 DOI ScienceOn |
43 | Folk RL, Ward WC (1957) Brazos river bar: A study in the significance of grain size parameters. J Sediment Petrol 27:3-26 DOI |
44 | Giblin AE, Hopkinson CS, Tucker J (1997) Benthic metabolism and nutrient cycling in Boston Harbor, Massachusetts. Estuaries 20:346-364 DOI ScienceOn |
45 | Holmer M (1996) Composition and fate of dissolved organic carbon derieved from phytoplankton detritus in coastal marine sediments. Mar Eco Prog Ser 141:217-228 DOI |
46 | Hargrave BT, Duplisea DE, Pfeiffer E, Wildish DJ (1993) Seasonal changes in benthic fluxes of dissolved oxygen and ammonium associated with marine cultured Atlantic salmon. Mar Ecol Prog Ser 96:249-257 DOI ScienceOn |
47 | Hansen TA (1993) Carbon metabolism of sulfate-reducing bacteria. In: Odom JM, Singleton R (eds) the sulfatereducing bacteria: contemporary perspectives. Springer-Verlag, New York, pp 21-40 |
48 | Hinrichs KU, Hayes JM, Sylva SP, Brewer PG, DeLong EF (1999) Methane consuming archaea and bacteria in marine sediments. Nature 398:802-805 DOI ScienceOn |
49 | Cho HY, Lee JH, Hyun JH (2004) Bacterial community structure and diversity using 16S rDNA anlaysis in the intertidal sediment of gwanghwa Island. Korean J Microbiol 40(3):189-198 (in Korean) 과학기술학회마을 |
50 | Bourbonniere RA, Meyers PA (1996) Sedimentary geolipid records of historical changes in the watersheds and productivities of Lakes Ontario and Erie. Limnol Oceanogr 41:352-359 DOI |
51 | Canfield DE, Thamdrup B, Hansen JW (1993) The anaerobic degradation of organic matter in Danish coastal sediment: Iron reduction, manganese reduction and sulfate reuction. Geochim Cosmochim Ac 57:3869-3883 |
52 | Capone DG, Keiene R (1988) Comparison of microbial dynamics in marine and freshwater sediments: Contrasts in anaerobic carbon catabolism. Limnol Oceanogr 33:725-749 DOI ScienceOn |
53 | Corrigan D, Kloos C, O'Connor CS, Timoney RF (1973) Alkanes from four types of Sphagnum moss. Phytochem 12:213-214 DOI ScienceOn |
54 | Muller PJ (1977) C/N ratios in Pacific deep-sea sediments: effect of inorganic ammonium and organic nitrogen compounds sorbed by clays. Geochim Cosmochim Ac 41: 765-776 DOI ScienceOn |
55 | Dzierzewicz Z, Cwalina B, Kurkiewicz S, Chodurek E, Wilczok T (1996) Intra-species variability of cellular fatty acids among soil and intestinal strains of Desulfovibrio desulfuricans. Appl Environ Microbiol 62:3360-3365 |
56 | Elvert M, Suess E, Whiticar MJ (1999) Anaerobic methane oxidation associated with marine gas hydrates: superlight C-isotopes from saturated and unsaturated C20 and C25 irregular isoprenoids. Naturwissenschaften 86:295-300 DOI |
57 | Elvert M, Boetius A, Knittel K, Jorgensen BB (2003) Characterization of specific membrane fatty acids as chemotaxonomic markers for sulfate-reducing bacteria involved in anaerobic oxidation of methane. Geomicrobiol J 20:403-419 DOI ScienceOn |
58 | Minami K, Tanimoto Y, Tasaki M, Ogawa S, Okamura K (1988) Influence of sulfate on methane fermentation in a defined medium. Wat Sci Tech 20:1561-1567 |
59 | MOF (2005) Tidal Ecosystems, Research and Study on the Sustainable Use Methods (Inventory of Tidal Flats in Korea). Ministry of Oceans and Fisheries, Se-Jong (in Korean) |
60 | Mok JS, Cho HY, Hyun JH (2005) Rates of anaerobic carbon mineralization and sulfate reduction in association with bioturbation in the intertidal mudflat of Gwanghwa, Korea. J Korean Soc Oceanogr 10(1):38-46 (in Korean) 과학기술학회마을 |
61 | NFRDI (2013) The fifth report of environmental assessment of Fishery survey. National Fisheries Research & Development Institute, Busan, 127 p (in Korean) |
62 | Rowland SJ, Maxwell JR (1984) Reworked triterpenoid and steroid hydrocarbons in a recent sediment. Geochim Cosmochim Ac 48:617-624 DOI ScienceOn |
63 | Choi JK, Ryu JH (2011) A study on the sedimentary facies change in the tidal flat using high spatial resolution remotely sensed data. Econ Eviron Geol 44(1):59-70 (in Korean) 과학기술학회마을 DOI ScienceOn |
64 | Greenwood PF, Summons RE (2003) GC-MS detection and significance of crocetane and pentamethylicosane in sediments and crude oils. Org Geochem 34:1211-1222 DOI ScienceOn |
65 | Lehmann MF, Bernasconi SM, Barbieri A, McKenzie JA (2002) Preservation of organic matter and alteration of its carbon and nitrogen isotope composition during simulated and in situ early sedimentary diagenesis. Geochim Cosmochim Ac 66:3573-3584 DOI ScienceOn |