Catabolic Pathway of Lignin Derived-Aromatic Compounds by Whole Cell of Phanerochaete chrysosporium (ATCC 20696) With Reducing Agent |
Hong, Chang-Young
(Division of Wood Chemistry & Microbiology, Department of Forest Products, National Institute of Forest Science)
Kim, Seon-Hong (Department of Forest Sciences, Seoul National University) Park, Se-Yeong (Department of Forest Sciences, Seoul National University) Choi, June-Ho (Department of Forest Sciences, Seoul National University) Cho, Seong-Min (Department of Forest Sciences, Seoul National University) Kim, Myungkil (Division of Wood Chemistry & Microbiology, Department of Forest Products, National Institute of Forest Science) Choi, In-Gyu (Department of Forest Sciences, Seoul National University) |
1 | Lipscomb, J.D. 2008. Mechanism of extradiol aromatic ring-cleaving dioxygenases. Current opinion in structural biology 18(6): 644-649. DOI |
2 | Lopretti, M., Cabella, D., Morais, J., Rodrigues, A. 1998. Demethoxylation of lignin-model compounds with enzyme extracts from Gloeophilum trabeum. Process biochemistry 33(6): 657-661. DOI |
3 | Martinez, D., Larrondo, L.F., Putnam, N., Gelpke, M.D.S., Huang, K., Chapman, J., Helfenbein, K.G., Ramaiya, P., Detter, J.C., Larimer, F. 2004. Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nature biotechnology 22(6): 695-700. DOI |
4 | Matsuzaki, F., Shimizu, M., Wariishi, H. 2008. Proteomic and metabolomic analyses of the white-rot fungus Phanerochaete chrysosporium exposed to exogenous benzoic acid. Journal of proteome research 7(6): 2342-2350. DOI |
5 | Miyauchi, K., Adachi, Y., Nagata, Y., Takagi, M. 1999. Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of -hexachlorocyclohexane in Sphingomonas paucimobilis. Journal of bacteriology 181(21): 6712-6719. |
6 | Munir, E., Yoon, J.-J., Tokimatsu, T., Hattori, T., Shimada, M. 2001a. New role for glyoxylate cycle enzymes in wood-rotting basidiomycetes in relation to biosynthesis of oxalic acid. Journal of wood science 47(5): 368-373. DOI |
7 | Quideau, S., Ralph, J. 1992. Facile large-scale synthesis of coniferyl, sinapyl, and p-coumaryl alcohol. Journal of agricultural and food chemistry 40(7): 1108-1110. DOI |
8 | Ravalason, H., Jan, G., Mollé, D., Pasco, M., Coutinho, P.M., Lapierre, C., Pollet, B., Bertaud, F., Petit-Conil, M., Grisel, S. 2008. Secretome analysis of Phanerochaete chrysosporium strain CIRM-BRFM41 grown on softwood. Applied microbiology and biotechnology 80(4): 719-733. DOI |
9 | Shimizu, M., Yuda, N., Nakamura, T., Tanaka, H., Wariishi, H. 2005. Metabolic regulation at the tricarboxylic acid and glyoxylate cycles of the lignin-degrading basidiomycete Phanerochaete chrysosporium against exogenous addition of vanillin. Proteomics 5(15): 3919-3931. DOI |
10 | Tien, M., Kirk, T.K. 1983. Lignin-degrading enzyme from the hymenomycete Phanerochaete chrysosporium Burds. Science(Washington) 221(4611): 661-662. DOI |
11 | Umezawa, T., Nakatsubo, F., Higuchi, T. 1982. Lignin degradation by Phanerochaete chrysosporium: Metabolism of a phenolic phenylcoumaran substructure model compound. Archives of microbiology 131(2): 124-128. DOI |
12 | Warrilow, A., Ugochukwu, C., Lamb, D., Kelly, D., Kelly, S. 2008. Expression and characterization of CYP51, the ancient sterol 14-demethylase activity for cytochromes P450 (CYP), in the white-rot fungus Phanerochaete chrysosporium. Lipids 43(12): 1143-1153. DOI |
13 | Weinstein, D.A., Krisnangkura, K., Mayfield, M.B., Gold, M.H. 1980. Metabolism of radiolabeled -guaiacyl ether-linked lignin dimeric compounds by Phanerochaete chrysosporium. Applied and environmental microbiology 39(3): 535-540. |
14 | Wong, L.-L. 1998. Cytochrome P450 monooxygenases. Current opinion in chemical biology 2(2): 263-268. DOI |
15 | Yadav, J.S., Soellner, M.B., Loper, J.C., Mishra, P.K. 2003. Tandem cytochrome P450 monooxygenase genes and splice variants in the white rot fungus Phanerochaete chrysosporium: cloning, sequence analysis, and regulation of differential expression. Fungal genetics and biology 38(1): 10-21. DOI |
16 | Adav, S.S., Ravindran, A., Sze, S.K. 2012. Quantitative proteomic analysis of lignocellulolytic enzymes by Phanerochaete chrysosporium on different lignocellulosic biomass. Journal of proteomics 75(5): 1493-1504. DOI |
17 | Ander, P., Eriksson, K.-E. 1985. Methanol formation during lignin degradation by Phanerochaete chrysosporium. Applied microbiology and biotechnology 21(1-2): 96-102. DOI |
18 | Ander, P., Eriksson, K.-E., Yu, H.-s. 1983. Vanillic acid metabolism by Sporotrichum pulverulentum: evidence for demethoxylation before ring-cleavage. Archives of microbiology 136(1): 1-6. DOI |
19 | Ander, P., Eriksson, M.E., Eriksson, K.E. 1985. Methanol production from lignin-related substances by Phanerochaete chrysosporium. Physiologia Plantarum 65(3): 317-321. DOI |
20 | Beckham, G. T., Johnson, C. W., Karp, E. M., Salvachua, D., & Vardon, D. R. 2016. Opportunities and challenges in biological lignin valorization. Current opinion in biotechnology 42: 40-53. DOI |
21 | Enoki, A., Goldsby, G.P., Gold, M.H. 1981. -Ether cleavage of the lignin model compound 4-ethoxy-3-methoxyphenylglycerol--guaiacyl ether and derivatives by Phanerochaete chrysosporium. Archives of Microbiology 129(2):141-145. DOI |
22 | Glenn, J.K., Morgan, M.A., Mayfield, M.B., Kuwahara, M., Gold, M.H. 1983. An extracellular -requiring enzyme preparation involved in lignin biodegradation by the white rot basidiomycete Phanerochaete chrysosporium. Biochemical and Biophysical Research Communications 114(3): 1077-1083. DOI |
23 | Gunsch, C.K., Cheng, Q., Kinney, K.A., Szaniszlo, P.J., Whitman, C.P. 2005. Identification of a homogentisate- 1, 2-dioxygenase gene in the fungus Exophiala lecanii-corni: analysis and implications. Applied microbiology and biotechnology 68(3): 405-411. DOI |
24 | Harayama, S., Kok, M., Neidle, E. 1992. Functional and evolutionary relationships among diverse oxygenases. Annual Reviews in Microbiology 46(1): 565-601. DOI |
25 | Higuchi, T. 1990. Lignin biochemistry: biosynthesis and biodegradation. Wood Science and Technology 24(1): 23-63. DOI |
26 | Hirosue, S., Tazaki, M., Hiratsuka, N., Yanai, S., Kabumoto, H., Shinkyo, R., Arisawa, A., Sakaki, T., Tsunekawa, H., Johdo, O. 2011. Insight into functional diversity of cytochrome P450 in the white-rot basidiomycete Phanerochaete chrysosporium: involvement of versatile monooxygenase. Biochemical and biophysical research communications 407(1): 118-123. DOI |
27 | Hofrichter, M. 2002. Review: lignin conversion by manganese peroxidase (MnP). Enzyme and Microbial technology 30(4): 454-466. DOI |
28 | Hong, C.Y. 2016. Biomodification of Lignin Compounds by Abortiporus biennis and Phanerochaete chrysosporium and Investigation of Related Enzymes by Transcriptomic Analysis. Ph.D. Thesis, Seoul National University, Seoul, Korea. |
29 | Hong, C.Y., Park, S.Y., Kim, S.H., Lee, S.Y., Ryu, S. H., Choi, I.G. 2016. Biomodification of ethanol organolsolv lignin by Abortiporus biennis and its structural change by addition of reducing agent. Journal of Korean Wood Science and Technology 44(1): 124-134. DOI |
30 | Kelly, S.L., Lamb, D.C., Jackson, C.J., Warrilow, A.G., Kelly, D.E. 2003. The biodiversity of microbial cytochromes P450. Advances in microbial physiology 47: 131-186. |
31 | Kersten, P.J., Tien, M., Kalyanaraman, B., Kirk, T.K. 1985. The ligninase of Phanerochaete chrysosporium generates cation radicals from methoxybenzenes. Journal of Biological Chemistry 260(5): 2609-2612. |
32 | Keyser, P., Kirk, T., Zeikus, J. 1978. Ligninolytic enzyme system of Phanaerochaete chrysosporium: synthesized in the absence of lignin in response to nitrogen starvation. Journal of bacteriology 135(3): 790-797. |
33 | Kinne, M., Poraj-Kobielska, M., Ralph, S.A., Ullrich, R., Hofrichter, M., Hammel, K.E. 2009. Oxidative cleavage of diverse ethers by an extracellular fungal peroxygenase. Journal of biological chemistry 284(43): 29343-29349. DOI |
34 | Kirk, T.K., Farrell, R.L. 1987. Enzymatic "combustion": the microbial degradation of lignin. Annual Reviews in Microbiology 41(1): 465-501. DOI |
35 | Kirk, T.K., Nakatsubo, F. 1983. Chemical mechanism of an important cleavage reaction in the fungal degradation of lignin. Biochimica et Biophysica Acta (BBA)-General Subjects 756(3):376-384. DOI |