Browse > Article
http://dx.doi.org/10.11626/KJEB.2019.37.4.592

Description of ten unrecorded bacterial species isolated from Ostrea denselamellosa and Eriocheir japonica from the Seomjin River  

Choi, Ahyoung (Microbial Research Department, Nakdonggang National Institute of Biological Resources)
Han, Ji-Hey (Microbial Research Department, Nakdonggang National Institute of Biological Resources)
Kim, Eui-Jin (Microbial Research Department, Nakdonggang National Institute of Biological Resources)
Cho, Ja Young (Microbial Research Department, Nakdonggang National Institute of Biological Resources)
Hwang, Sun-I (Microbial Research Department, Nakdonggang National Institute of Biological Resources)
Publication Information
Korean Journal of Environmental Biology / v.37, no.4, 2019 , pp. 592-599 More about this Journal
Abstract
Ostrea denselamellosa and Eriocheir japonica samples were collected from the Seomjin River in 2019 as part of the "Research of Host-Associated Bacteria" research program. Almost 200 bacterial strains were isolated from the O. denselamellosa and E. japonica samples and subsequently identified by 16S rRNA gene sequencing. Among the bacterial isolates, ten strains possessed greater than 98.7% sequence similarity with published bacterial species that had not previously been recorded in Korea. These species were phylogenetically diverse, belonging to three phyla, four classes, seven orders, and eight genera. At the genus and class level, the previously unrecorded species belonged to Pseudoalteromonas, Aliivibrio, Rheinheimera, Leucothrix, and Shewanella of the class Gamma-proteobacteria, Olleya of the class Flavobacteriia, Algoriphagus of the class Cytophagia, and Lactococcus of the class Bacilli. The previously unrecorded species were further characterized by examining their Gram staining, colony and cell morphology, biochemical properties, and phylogenetic positions.
Keywords
Seomjin River; unrecorded bacterial species; Ostrea denselamellosa; Eriocheir japonica;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Barlow JP. 1955. Physical and biological processes determining the distribution of zooplankton in a tidal estuary. Biol. Bull. 109:211-225.   DOI
2 Day JW Jr., CAS Hall, WM Kemp and A Yanez Arancibia. 2018. Estuarine Ecology. John Wiley, New York. p. 558.
3 Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.   DOI
4 Fisher TR, PR Carlson and RT Barber. 1982. Carbon and nitrogen primary productivity in three North Carolina estuaries. Estuar. Coast. Shelf Sci. 15:621-644.   DOI
5 Jeon YS, K Lee, SC Park, BS Kim, YJ Cho, SM Ha and J Chun. 2014. EzEditor: a versatile sequence alignment editor for both rRNA-and protein-coding genes. Int. J. Syst. Evol. Microbiol. 64:689-691.   DOI
6 Kim OS, YJ Cho, K Lee, SH Yoon, M Kim, H Na, SC Park, YS Jeon, JH Lee, H Yi, S Won and J Chun. 2012. Introducing Ez-Taxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62:716-721.   DOI
7 Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.   DOI
8 Kobayashi S. 2011. Growth patterns of the Japanese mitten crab Eriocheir Japonica (De Haan) in its river phase in Fukuoka Prefecture, Japan. J. Crustac. Biol. 31:653-659.   DOI
9 Kumar S, G Stecher and K Tamura. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Mol. Biol. Evol. 33:1870-1874.   DOI
10 Lance J. 1963. The salinity tolerance of some estuarine plankton copepods. Limnol. Oceanogr. 8:440-449.   DOI
11 Lane DJ. 1991. 16S/23S rRNA sequencing. p. 115. In Nucleic Acid Techniques in Bacterial Systematics. John Wiley and Sons, New York.
12 Min DK, JS Lee, DB Koh and JG Je. 2004. Mollusks in Korea. Hangul Graphics, Busan. pp. 410-415.
13 Noseworthy RG, HJ Lee, SD Choi and KS Choi. Unique substrate preference of Ostrea denselamellosa Lischke, 1869 (Mollusca: Ostreidae) at Haechang Bay, on the south coast of Korea. Korean J. Parasitol. 32:31-36.
14 Ringo E, Z. Zhou, JLG Vecino, S Wadsworth, J Romero, Å Krogdahl, RE Olsen, A Dimitroglou, A Foey, S Davies, M Owen, HL Lauzon, LL Martinsen, P de Schryver, P Bossier, S Sperstad and DL Merrifield. 2016. Effects of dietary components on the gut microbiota of aquatic animals: a never-ending story? Aquac. Nutr. 22:219-282.   DOI
15 Saitou N and M Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
16 Trabal N, JM Mazon-Suastegui, R Vazquez -Juarez, F Asencio-Valle, E Morales-Bojorquez and J Romero. 2012. Molecular analysis of bacterial microbiota associated with oysters (Crassostrea gigas and Crassostrea corteziensis) in different growth phases at two cultivation sites. Microb. Ecol. 64:555-569.   DOI
17 Yang MH, CH Han, HS Kim and SD Choi. 1999 Environmental characteristics of natural conditions of the flat oyster, Ostrea denselamellosa, in Haechang Bay, Korea. Korean J. Parasitol. 15:105-113.