Browse > Article
http://dx.doi.org/10.11626/KJEB.2019.37.3.380

Study on the correlation between the soil bacterial community and growth characteristics of wild-simulated ginseng(Panax ginseng C.A. Meyer)  

Kim, Kiyoon (Forest Medicinal Resources Research Center, National Institute of Forest Science)
Um, Yurry (Forest Medicinal Resources Research Center, National Institute of Forest Science)
Jeong, Dae Hui (Forest Medicinal Resources Research Center, National Institute of Forest Science)
Kim, Hyun-Jun (Forest Medicinal Resources Research Center, National Institute of Forest Science)
Kim, Mahn Jo (Forest Medicinal Resources Research Center, National Institute of Forest Science)
Jeon, Kwon Seok (Forest Medicinal Resources Research Center, National Institute of Forest Science)
Publication Information
Korean Journal of Environmental Biology / v.37, no.3, 2019 , pp. 380-388 More about this Journal
Abstract
The studies regarding soil bacterial community and correlation analysis of wild-simulated ginseng cultivation area are insufficient. The purpose of this study was to investigate the correlation between soil bacterial community and growth characteristics of wild-simulated ginseng for selection of suitable cultivation area. The bacterial community was investigated by high throughput sequencing technique (Illumina platform). The correlation coefficient between soil bacterial community and growth characteristics were analyzed using Spearman's rank correlation. The soil bacterial community from soil samples of 8 different wild-simulated ginseng cultivated area exhibited two distinct clusters, cluster 1 and cluster 2. The relative abundance of Proteobacteria (35.4%) and Alphaproteobacteria(24.4%) was observed to be highest in all soil samples. The lower soil pH and higher abundance of Acidobacteria resulted in increased growth of wild-simulated ginseng. Additionally, abundance of Acidobacteriia (class) and Koribacteraceae (family) demonstrated significant positive correlation with fresh weight of wild-simulated ginseng. The results of this study clearly state the correlation between growth characteristic and soil bacterial community of wild-simulated ginseng cultivation area, thereby offering effective insight into selection of suitable cultivation area of wild-simulated ginseng.
Keywords
Panax ginseng C.A. Meyer; correlation analysis; pyrosequencing analysis; soil bacterial community; wild-simulated ginseng;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 Schloss PD, SL Westcott, T Ryabin, JR Hall, M Hartmann, EB Hollister, RA Lesniewski, BB Oakley, DH Parks, CJ Robinson, JW Sahl, B Stres, GG Thallinger, DJ van Horn and CF Weber. 2009. Introducing mothur: open source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75:7537-7541.   DOI
2 Selvakumar G, KY Kim, S Hu and TM Sa. 2014. Effect of salinity on plant and the role of arbuscular mycorrhizal fungi and plant growth promoting rhizobacteria in alleviation of salt stress. pp. 115-137. In Physiological Mechanism and Adaptation Strategies in Plant under Changing Environment (Ahmad P and MR Wani eds.). Springer, New York, USA.
3 Sogin ML, HG Morrison, JA Huber, DM Welch, SM Huse, PR Neal, JM Arrieta and GJ Herndl. 2006. Microbial diversity in the deep sea and the underexplored "rare biosphere". PNAS 103:12115-12120.   DOI
4 Song X, B Tao, J Guo, J Li and G Chen. 2018. Changes in the microbial community structure and soil chemical properties of vertisols under different cropping systems in Northern China. Front. Environ. Sci. 6:132.   DOI
5 Sun H, Q Wang, N Liu, C Zhang, Z Liu and Y Zhang. 2017. Effects of different leaf litters on the physicochemical properties and bacterial communities in Panax ginseng-growing soil. Appl. Soil Ecol. 111:17-24.   DOI
6 Takaya SB, S Tipayno, KY Kim, P Subramanian and TM Sa. 2014. Rhizobactera: Restoration of heavy metal contaminated soil. pp. 297-323. In Physiological Mechanism and Adaptation Strategies in Plant under Changing Environment (Ahmad P and MR Wani eds.). Springer, New York, USA.
7 Wang Q, H Sun, C Xu, L Ma, M Li, C Shao, Y Guan and N Liu. 2019. Analysis of rhizosphere bacterial and fungal communities associated with rusty root disease of Panax ginseng. Appl. Soil Ecol. 138:245-252.   DOI
8 Cao H, R Chen, L Wand, L Jiang, F Yang, S Zheng, G Wang and X Lin. 2016. Soil pH, total phosphorus, climate and distance are the major factors influencing microbial activity at a regional spatial scale. Sci. Rep. 6:25815.   DOI
9 Bartram AK, X Jiang, MDJ Lynch, AP Masella, GW Nicol, J Dushoff and JD Neufeld. 2014. Exploring links between pH and bacterial community composition in soil from the Craibstone Experimental Farm. FEMS Microbiol. Ecol. 87:403-415.   DOI
10 Busby PE, C Soman, MR Wagner, ML Friesen, J Kremer, A Bennett, M Morsy, JA Eisen, JE Leach and JL Dangl. 2017. Research priorities for harnessing plant microbiomes in sustainable agriculture. PLOS Biol. 15:1-14.
11 Denance N, A Sanchez-Vallet, D Goffner and A Molina. 2013. Disease resistance or growth: the role of plant hormones in balancing immune responses and fitness costs. Front. Plant Sci. 4:155.   DOI
12 Dong L, J Xu, Y Li, H Fang, W Niu, X Li, Y Zhang, W Ding and S Chen. 2018. Manipulation of microbial community in the rhizosphere alleviates the replanting issues in Panax ginseng. Soil Biol. Biochem. 125:64-74.   DOI
13 Hartmann M, PA Nikalus, S Zimmermann, S Schmutz, J Kremer, K Abarenkov, P Luscher, F Widmer and B Frey. 2014. Resistance and resilience of the forest soil microbiome to loggingassociated compaction. ISME J. 8:226-244.   DOI
14 Hatfield JL and JH Prueger. 2015. Temperature extremes: Effect on plant growth and development. Weather Clim. Extrem. 10:4-10.   DOI
15 Jeon KS, YR Um, CR Jung, HW Park and MJ Kim. 2018. Standard Cultivation Manual of Wild-Simulated Ginseng. National Institute of Forest Science, Seoul, Korea.
16 Jeong JH, KS Koo, CH Lee and CS Kim. 2002. Physico-chemical properties of Korean forest soils by regions. J. Korean For. Soc. 91:694-700.
17 Xue L, H Ren, S Li, X Leng and X Yao. 2017. Soil bacterial community structure and co-occurrence pattern during vegetation restoration in karst rocky desertification area. Front. Microbiol. 8:2377.   DOI
18 Wisam ARA, AA Fadhal, HK Jamal and HH Wurood. 2018. Study physiology of roots growth for soybean by WinRhizo pro software with Vam3 genes. pp. 1-22. In Proceedings of the International Conference on Promotion of Scientific & Regional Cooperation on Food and Agricultural Sciences. Mashhad, Iran.
19 Wu Y, J Zeng, Q Zhu, Z Zhang and X Lin. 2017. pH is the primary determinant of the bacterial community structure in agricultural soils impacted by polycyclic aromatic hydrocarbon pollution. Sci. Rep. 7:40093.   DOI
20 Wu Z, Q Liu, Z Li, W Cheng, J Sun, Z Guo, Y Li, J Zhou, D Meng, H Li, P Lei and H Yin. 2018. Environmental factors shaping the diversity of bacterial communities that promote rice production. BMC Microbiol. 18:51.   DOI
21 Lee DS. 2010. Weather characteristic and growth of a forest ginseng cultivation site. J. Korean For. Soc. 99:863-870.
22 Kim KY, S Samaddar, P Chatterjee, R Krishnammorthy, SY Jeon and TM Sa. 2019. Structural and functional responses of microbial community with respect to salinity levels in a coastal reclamation land. Appl. Soil Ecol. 137:96-105.   DOI
23 KOFPI. 2013. The cultivation of wild-simulated ginseng. pp. 14-34. In Wild -Simulated Ginseng and Cultural Environments. Korea Forestry Promotion Institute, Seoul, Korea.
24 Kown SD, JH Kang, JH Yoon and HS Moon. 2011. An analysis on site, soil and cultivation characteristics of Korean mountain cultivated ginseng (Panax ginseng) filed. J. Agric. Life Sci. 45: 81-88.
25 KSVS. 2014. Know-How of Characteristics Investigation of the Crops: Ginseng (Panax ginseng Meyer). Korea Seed and Variety Service, Gimcheon, Korea.
26 Lee BJ and SH Eo. 2017. Soil bacterial community in red pine forest of Mt. Janggunbong, Bonghwa-gun, Gyeongbuk, Korea, using next generation sequencing. J. Korean For. Soc. 106: 121-129.   DOI
27 Lee DS. 2011. Theory and Practice of Growing Forest Cultivated Ginseng. Nexus Publish, Paju, Korea.
28 Li H, D Ye, X Wang, ML Settles, J Wang, Z Hao, L Zhou, P Dong, Y Jiang and ZS Ma. 2014. Soil bacterial communities of different natural forest types in Northeast Chaina. Plant Soil 383: 203-216.   DOI
29 Lipied J, C Doussan, A Nosalewicz and K Kondracka. 2013. Effect of drought and heat stresses on plant growth and yeild: a review. Int. Agrophys. 27:463-477.   DOI
30 Nguyen NL, YJ Kim, VA Hoang, S Subramaniyam, JP Kang, CH Kang and DC Yang. 2016. Bacterial diversity and community structure in Korean ginseng field soil are shifted by cultivation time. PLOS ONE 11:e0155055.   DOI
31 Prasad R, M Kumar and A Varma. 2015. Role of PGPR in soil fertility and plant health. pp. 247-260. In Plant-Growth-Promoting Rhizobacteria (PGPR) and Medicinal Plant (Egamberdieva et al. eds.). Springer, Switzerland.
32 Pandey P, V Irulappan, MV Bagacathiannan and M Senthil-Kumar. 2017. Impact of combined abiotic and biotic stresses on plant growth and avenues for crop improvement by exploiting physio-morphological traits. Front. Plant Sci. 8:537.
33 Pettersson M. 2004. Factors Affecting the Rates of Change in Soil Bacterial Communities. Lund University, Sweden.
34 Prasad R, S Kamal, PK Sharma, R Oelmueller and A Varma. 2013. Root endophyte Piriformospora indica DSM 11827 alters plants morphology, enhances biomass and antioxidant activity of medicinal plant Bacopa monniera. J. Basic Microbiol. 52: 1016-1024.
35 Ramegowda V and M Senthil-Kumar. 2015. The interactive effect of simultaneous biotic and abiotic stresses on plant: mechanistic understanding from drought and pathogen combination. J. Plant Physiol. 176:47-54.   DOI
36 RDA. 2013. Analysis Manual of Comprehensive Examination Laboratory (Soil, Plant, Water and Liquid manure). Rural Development Administration, Suwon, Korea. pp. 31-53.
37 Ren B, Y Hu, B Chen, Y Zhang, L Thiele, R Shi, M Liu and R Bu. 2018. Soil pH and plant diversity shape soil bacterial community structure in the active layer across the latitudinal gradient in continuous permafrost region of Northeastern China. Sci. Rep. 8:5619.   DOI
38 Schloss PD. 2009. Ahigh-throughput DNA sequence aligner for microbial ecology studies. PLOS ONE 4:e8230.   DOI