An EST-based approach for identifying genes expressed in the gills of olive flounder Paralichthys olivaceus |
Lee, Jeong-Ho
(Genetics and Breeding Research Center, NFRDI)
Noh, Jae-Koo (Genetics and Breeding Research Center, NFRDI) Kim, Hyun-Chul (Genetics and Breeding Research Center, NFRDI) Park, Choul-Ji (Genetics and Breeding Research Center, NFRDI) Min, Byung-Hwa (Genetics and Breeding Research Center, NFRDI) Kim, Young-Ok (Biotechnology Research Division, NFRDI) Kim, Jong-Hyun (Aquaculture Management Division, NFRDI) Kim, Kyung-Kil (Biotechnology Research Division, NFRDI) Kim, Woo-Jin (Biotechnology Research Division, NFRDI) Myeong, Jeong-In (Genetics and Breeding Research Center, NFRDI) |
1 | Adams, M.D., Kelley, J.M., Gocayne, J.D., Dubnick, M., Polymeropoulos, M.H., Xiao, H., Merril, C.R., Wu, A., Olde, B., Moreno, R.F., Kerlavage, A.R., McCombie, W.R. and Venter, J.C.: Complementary DNA sequencing: expressed sequence tags and human genome project. Science, 252:1651-1656, 1991 DOI ScienceOn |
2 | Amano, A., Nakagawa, I. and Yoshimori, T.: Autophagy in innate immunity against intracellular bacteria. J. Biochem. (Tokyo), 140:161-166, 2006 DOI ScienceOn |
3 | Aoki, T., Nam, B-H., Hirono, I. and Yamamoto, E.: Sequences of 596 cDNA (565,977 bp) clones of Japanese flounder (Paralichthys olivaceus) leukocytes infected with hirame rhabdovirus. Mar. Biotechnol., 1:477-488, 1999 DOI |
4 | Burgents, J.E., Burnett, L.E., Stabb, E.V. and Burnett, K.G.: Localization and bacteriostasis of Vibrio introduced into the Pacific white shrimp, Litopenaeus vannamei. Dev. Comp. Immunol., 29:681-691, 2005 DOI ScienceOn |
5 | Kono, T. and Sakai, M.: The analysis of expressed genes in the kidney of Japanese flounder, Paralichthys olivaceus, injected with the immunostimulant peptidoglycan. Fish Shellfish Immunol., 1:357-366, 2001 DOI ScienceOn |
6 | Lee, J.H., Kim, Y.O., Kim, K.K., Kim, W.J., Park, D.W. and Kim, K.W.: Expressed sequence tag analysis of olive flounder (Paralichthys olivaceus): genes and expression profiles from the liver. J. Fish. Sci. Tech., 6:110-115, 2003 ScienceOn |
7 | Lee, J.H., Kim, Y.O., Kim, J.H, Noh, J.K., Kim, H.C., Kim, K.K. and Kim, K.W.: Immune gene discovery by expressed sequence tags generated from olive flounder (Paralichthys olivaceus) kidney. Korean J. Ichthyol., 18:283-292, 2006 |
8 | Lee, J.H., Kim, J.H., Noh, J.K., Kim, H.C., Kim, Y.O., Kim, W.J., Kim, K.W. and Kim, K.K. Expressed sequence tags of expression profiles of olive Flounder (Paralichthys olivaceus) testis. Korean J. Ichthyol., 19:257-265, 2007 |
9 | Levine, B. and Yuan, J.: Autophagy in cell death: An innocent convict? J. Clin. Invest., 115:2679-2688, 2005 DOI ScienceOn |
10 | Martin, G.G., Quintero, M., Quigley, M. and Khosrovian, H.: Elimination of sequestered material from the gills of decapod crustaceans. J. Crustac. Biol. 20:209-217, 2000 DOI ScienceOn |
11 | Kono, T., Sakai, M. and LaPatra, S.E.: Expressed sequence tag analysis of kidney and gill tissues from rainbow trout (Oncorhynchus mykiss) infected with infectious hematopoietic necrosis virus. Mar. Biotechnol., 2:493-498, 2000 ScienceOn |
12 | Liu, Y., Schiff, M., Czymmek, K., Talloczy, Z., Levine, B. and Dinesh-Kumar, S.P.: Autophagy regulates programmed cell death during the plant innate immune response. Cell, 121:567-577, 2005 DOI ScienceOn |
13 | Nam B-H., Hirono, I.and Aoki, T.: Bulk isolation of immune response-related genes by expressed sequenced tags of Japanese flounder Paralichthys olivaceus leucocytes stimulated with Con A/PMA. Fish Shellfish Immunol., 14:467-476, 2003 DOI ScienceOn |
14 | Parsons, J.D.: Improved tools for DNA comparison and clustering. Comp. Appl. Biosci., 11:603-613, 1995 ScienceOn |
15 | Levine, B.: Eating oneself and uninvited guests: Autophagyrelated pathways in cellular defense. Cell, 120:159-162, 2005 DOI ScienceOn |
16 | Nakae, S., Saijo, S., Horai, R., Sudo, K., Mori, S. and Iwakura, Y.: IL-17 production from activated T cells is required for the spontaneous development of destructive arthritis in mice deficient in IL-1 receptor antagonist. Proc. Natl. Acad. Sci. USA, 100:5986-5990, 2003 DOI ScienceOn |
17 | Kolls, J.K. and Linde´n, A.: Interleukin-17 family members and inflammation. Immunity, 21:467-476, 2004 DOI ScienceOn |
18 | Lee, J., Ho, W.H., Maruoka, M., Corpuz, R.T., Baldwin, D.T., Foster, J.S., Goddard, A.D., Yansura, D.G., Vandlen, R.L., Wood, W.I. and Gurney, A.L.: IL-17E, a novel proinflammatory ligand for the IL-17 receptor homolog IL-17Rh1. J. Biol. Chem., 276:1660-1664, 2001 DOI ScienceOn |
19 | Aita, V.M., Liang, X.H., Murty, V.V., Pincus, D.L., Yu, W., Cayanis, E., Kalachikov, S., Gilliam, T.C. and Levine, B.: Cloning and genomic organization of beclin 1, a candidate tumor suppressor gene on chromosome 17q21. Genomics, 59:59-65, 1999 DOI ScienceOn |
20 | Sambrook, J., Frisch, E.F. and Maniatis, T.: Molecular Cloning, A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, 1989 |
21 | Nam, B-H., Yamamoto, E., Hirono, I. and Aoki, T.: A survey of expressed genes in the leukocytes of Japanese flounder, Paralichthys olivaceus, infected with hirame rhabdovirus. Dev. Comp. Immunol., 24:13-24, 2000 DOI ScienceOn |
22 | Liang, X.H., Jackson, S., Seaman, M., Brown, K., Kempkes, B., Hibshoosh, H. and Levine, B.: Induction of autophagy and inhibition of tumorigenesis by beclin 1. Nature, 402:672-676, 1999 DOI ScienceOn |
23 | Savan, R. and Sakai, M.: Analysis of expressed sequence tags (EST) obtained from common carp, Cyprinus carpio L., head kidney cells after stimulation by two mitogens, lipopolysaccharide and concanavalin-A. Comp. Biochem. Physiol., 131:71-82, 2002 DOI ScienceOn |
24 | Liew, C.C., Hwang, D.M., Fung, Y.W., Laurenssen, C., Cukerman, E., Tsui, S. amd Lee, C.Y.: A catalogue of genes in the cardiovascular system as identified by expressed sequence tags (ESTs). Proc. Natl. Acad. Sci. USA, 91:10645-10649, 1994 DOI ScienceOn |
25 | Liang, X.H., Yu, J., Brown, K. and Levine, B.: Beclin 1 contains a leucine-rich nuclear export signal that is required for its autophagy and tumor suppressor function. Cancer Res., 61:3443-3449, 2001 ScienceOn |
26 | Stark, M.A., Huo, Y., Burcin, T.L., Morris, M.A., Olson, T.S. and Ley, K.: Phagocytosis of apoptotic neutrophils regulates granulopoiesis via IL-23 and IL-17. Immunity, 22:285-294, 2005 DOI ScienceOn |
27 | Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J.: Basic local alignment search tool. J. Mol. Biol., 215:403-410, 1990 ScienceOn |
28 | Shi, Y., Ullrich, S.J., Zhang, J., Connolly, K., Grzegorzewski, K.J., Barber, M.C.,Wang, W., Wathen, K., Hodge, V., Fisher, C.L., Olsen, H., Ruben, S.M., Knyazev, I., Cho, Y.H., Kao, V., Wilkinson, K.A., Carrell, J.A. and Ebner, R.:A novel cytokine receptor-ligand pair. Identification, molecular characterization, and in vivo immunomodulatory activity. J. Biol. Chem., 275:19167-19176, 2000 DOI ScienceOn |