Methane Oxidation Potentials of Rice-associated Plant Growth Promoting Methylobacterium Species |
Kang, Yeongyeong
(Department of Environmental and Biological Chemistry, Chungbuk National University)
Walitang, Denver I. (Department of Environmental and Biological Chemistry, Chungbuk National University) Seshadri, Sundaram (Indigenous and Frontier Technology Research Centre) Shin, Wan-Sik (Korea Institute of Planning and Evaluation for Technology in Food, Agriculture and Forestry) Sa, Tongmin (The Korean Academy of Science and Technology) |
1 | Okumura M, Fujitani Y, Maekawa M, Charoenpanich J, Murage H, Kimbara K, Sahin N, Tani A (2017) Cultivable Methylobacterium species diversity in rice seeds identified with whole-cell matrix-assisted laser desorption/ionization time-of-flight mass spectrometric analysis. Journal of Bioscience and Bioengineering, 123(2), 190-196. https://doi.org/10.1016/j.jbiosc.2016.09.001. DOI |
2 | Kumar AA, Nayak S, Mohanty, Das B (2016) Greenhouse gas emission from direct seeded paddy fields under different soil water potentials in Eastern India. Agriculture, Ecosystems and Environment, 228, 111-123. https://doi.org/10.1016/j.agee.2016.05.007. DOI |
3 | Linquist B, Van Groenigen KJ, Adviento-Borbe MA, Pittelkow C, Van Kessel C (2012) An agronomic assessment of greenhouse gas emissions from major cereal crops. Global Change Biology 18(1), 194-209. https://doi.org/10.1111/j.1365-2486.2011.02502.x. DOI |
4 | Conrad R (2007) Microbial ecology of methanogens and methanotrophs. Advances in Agronomy, 96, 1-63. https://doi.org/10.1016/S0065-2113(07)96005-8. DOI |
5 | Madhaiyan M, Kim BY, Poonguzhali S, Kwon SW, Song MH, Ryu JH, Go SJ, Koo BS, Sa TM (2007a). Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase- producing bacterium isolated from rice. International Journal of Systematic and Evolutionary Microbiology, 57(2), 326-331. https://doi.org/10.1099/ijs.0.64603-0. DOI |
6 | Ryu J, Madhaiyan M, Poonguzhali S, Yim W, Indiragandhi P, Kim K, Anandham R, Yun J, Kim K, Sa T (2006) Plant growth substances produced by Methylobacterium spp. and their effect on tomato (Lycopersicon esculentum L.) and red pepper (Capsicum annuum L.) growth. Journal of Microbiology and Biotechnology, 16(10), 1622-1628. |
7 | Wuebbles DJ, Hayhoe K (2002) Atmospheric methane and global change. Earth-Science Reviews, 57(3-4), 177-210. https://doi.org/10.1016/S0012-8252(01)00062-9. DOI |
8 | Le Mer J, Roger P (2001) Production, oxidation, emission and consumption of methane by soils: a review. European Journal of Soil Biology, 37(1), 25-50. https://doi.org/10.1016/S1164-5563(01)01067-6. DOI |
9 | Saunois M, Stavert AR, Poulter B, Bousquet P, Canadell JG, Jackson RB, Zhuang Q (2020) The global methane budget 2000-2017. Earth System Science Data, 12(3), 1561-1623. https://doi.org/10.5194/essd-12-1561-2020. DOI |
10 | Yan X, Akiyama H, Yagi K, Akimoto H (2009) Global estimations of the inventory and mitigation potential of methane emissions from rice cultivation conducted using the 2006 intergovernmental panel on climate change guidelines. Global Biogeochemical Cycles, 23(2), 1-15. https://doi.org/10.1029/2008GB003299. DOI |
11 | McDonald IR, Kenna EM, Murrell JC (1995) Detection of methanotrophic bacteria in environmental- samples with the PCR. Applied and Environmental Microbiology, 61(1), 116-121. https://doi.org/10.1128/aem.61.1.116-121.1995. DOI |
12 | Lee HS, Madhaiyan M, Kim CW, Choi SJ, Chung KY, Sa TM (2006) Physiological enhancement of early growth of rice seedlings (Oryza sativa L.) by production of phytohormone of N2-fixing methylotrophic isolates. Biology and Fertility of Soils, 42(5), 402-408. https://doi.org/10.1007/s00374-006-0083-8. DOI |
13 | Lowry OH, Rosebrough NJ, Farr AL, Randall RJ (1951) Protein measurement with the Folin phenol reagent. Journal of Biological Chemistry, 193(1), 265-275. https://doi.org/10.1016/S0021-9258(19)52451-6. DOI |
14 | Patel RN, Hou CT, Laskin AI, Felix A (1982) Microbial Oxidation of Hydrocarbons: Properties of a Soluble Methane Monooxygenase from a Facultative Methane Utilizing Organism, Methylobacterium sp. Strain CRL-26. Applied and Environmental Microbiology, 44(5), 1130-113. https://doi.org/10.1128/aem.44.5.1130-1137.1982. DOI |
15 | Kumar M, Tomar RS, Lade H, Paul D (2016) Methylotrophic bacteria in sustainable agriculture. World Journal of Microbiology and Biotechnology, 32(7), 1-9. https://doi.org/10.1007/s11274-016-2074-8. DOI |
16 | Madhaiyan M, Poonguzhali S, Sa T (2007b). Characterization of 1-aminocyclopropane-1-carboxylate (ACC) deaminase containing Methylobacterium oryzae and interactions with auxins and ACC regulation of ethylene in canola (Brassica campestris). Planta, 226(4), 867-876. https://doi.org/10.1007/s00425-007-0532-0. DOI |
17 | Senthilkumar M, Pushpakanth P, Arul Jose P, Krishnamoorthy R, Anandham R (2021) Diversity and functional characterization of endophytic Methylobacterium isolated from banana cultivars of South India and its impact on early growth of tissue culture banana plantlets. Journal of Applied Microbiology, 131(5), 2448-2465. https://doi.org/10.1111/jam.15112 . DOI |
18 | Van Aken B, Peres CM, Doty SL, Yoon JM, Schnoor JL (2004) Methylobacterium populi sp. nov., a novel aerobic, pink-pigmented, facultatively methylotrophic, methane-utilizing bacterium isolated from poplar trees (Populus deltoids × nigra DN34). International Journal of Systematic and Evolutionary Microbiology, 54(4) 1191-1196. https://doi.org/10.1099/ijs.0.02796-0. DOI |
19 | Whittenbury R, Phillips KC, Wilkinson JF (1970) Enrichment, isolation and some properties of methane-utilizing bacteria. Journal of General Microbiology, 61(2), 205-218. https://doi.org/10.1099/00221287-61-2-205. DOI |
20 | Jhala YK, Vyas RV, Shelat HN, Patel HK, Patel HK, Patel KT (2014). Isolation and characterization of methane utilizing bacteria from wetland paddy ecosystem. World Journal of Microbiology and Biotechnology, 30(6), 1845-1860. https://doi.org/10.1007/s11274-014-1606-3. DOI |
21 | Shigematsu T, Hanada S, Eguchi M, Kamagata Y, Kanagawa T, Kurane R (1999) Soluble methane monooxygenase gene clusters from trichloroethylene-degrading Methylomonas sp. strains and detection of methanotrophs during in situ bioremediation. Applied and Environmental Microbiology, 65(12), 5198-5206. https://doi.org/10.1128/AEM.65.12.5198-5206.1999. DOI |
22 | Patt TE, Cole GC, Hanson RS (1976). Methylobacterium, a new genus of facultatively methyotrophic bacteria. International Journal of Systematic and Evolutionary Microbiology, 26(2), 226-229. https://doi.org/10.1099/00207713-26-2-226. DOI |
23 | Dedysh SN, Knief C, Dunfield PF (2005). Methylocella species are facultatively methanotrophic. Journal of Bacteriology, 187(13), 4665-4670. https://doi.org/10.1128/JB.187.13.4665-4670.2005. DOI |
24 | Brusseau GA, Tsien HC, Hanson RS, Wackett LP (1990) Optimization of trichloroethylene oxidation by methanotrophs and the use of a colorimetric assay to detect soluble methane monooxygenase activity. Biodegradation, 1(1), 19-29. DOI |
25 | Dedysh SN, Dunfield PF, Trotsenko YA (2004) Methane utilization by Methylobacterium species: New evidence but still no proof for an old controversy. International Journal of Systematic and Evolutionary Microbiology, 54(6), 1919-1920. https://doi.org/10.1099/ijs.0.63493-0. DOI |
26 | Babbitt CW, Lindner AS (2011) Effect of nitrogen source on methanol oxidation and genetic diversity of methylotrophic mixed cultures enriched from pulp and paper mill biofilms. Biodegradation, 22(2), 309-320. https://doi.org/10.1007/s10532-010-9400-x. DOI |
27 | Koh SC, Bowman JP, Sayler GS (1993) Soluble methane monooxygenase production and trichloroethylene degradation by a Type-I methanotroph, Methylomonas methanica 68-1. Applied and Environmental Microbiology, 59(4), 960-967. https://doi.org/10.1128/aem.59.4.960-967.1993. DOI |
28 | Kim C, Walitang DI, Sa TM (2021) Methanogenesis and methane oxidation in paddy fields under organic fertilization. Korean Journal of Environmental Agriculture, 40(4), 295-312. https://doi.org/10.5338/KJEA.2021.40.4.34. DOI |
29 | Korotkova N, Lidstrom ME (2001) Connection between Poly-B-Hydroxybutyrate biosynthesis and growth on C1 and C2 compounds in the Methylobacterium extorquens AM1. Journal of Bacteriology, 183(3), 1038-1046. https://doi.org/10.1128/JB.183.3.1038-1046.2001. DOI |
30 | Miller A, Keener W, Watwood M, Roberto F (2002) A rapid fluorescence-based assay for detecting soluble methane monooxygenase. Applied Microbiology and Biotechnology, 58(2), 183-188. https://doi.org/10.1007/s00253-001-0885-4. DOI |
31 | Sirajuddin S, Rosenzweig AC (2015) Enzymatic Oxidation of Methane. Biochemistry, 54(14), 2283-2294. https://doi.org/10.1021/acs.biochem.5b00198. DOI |
32 | Kim C, Walitang DI, Roy Choudhury A, Lee Y, Lee S, Chun H, Heo T, Park K, Sa TM (2022) Changes in soil chemical properties due to long-term compost fertilization regulate methane turnover related gene abundances in rice paddy. Applied Sciences, 12(5), 2652. https://doi.org/10.3390/app12052652. DOI |
33 | Zuniga C, Morales M, Le Borgne S, Revah S (2011) Production of poly-hydroxybutyrate (PHB) by Methylobacterium organophilum isolated from a methanotrophic consortium in a two-phase partition bioreactor. Journal of Hazardous Materials, 190, 876-882. https://doi.org/10.1016/j.jhazmat.2011.04.011. DOI |
34 | Dourado MN, Aparecida Camargo Neves A, Santos DS, Araujo WL (2015) Biotechnological and agronomic potential of endophytic pink-pigmented methylotrophic Methylobacterium spp. BioMed Research International, https://doi.org/10.1155/2015/909016. DOI |
35 | Graham DW, Korich DG, LeBlanc RP, Sinclair NA, Arnold RG (1992). Applications of a colometric plate assay for soluble methane monooxygenase activity. Applied and Environmental Microbiology, 58(7), 2231-2236. https://doi.org/10.1128/aem.58.7.2231-2236.1992. DOI |