Production and Application of Recombinant Agarase |
Kim, Se Won
(Department of Biochemical and Polymer Engineering, Chosun University)
Hong, Chae-Hwan (Research & Development Division, Hyundai Motor Group) Yun, Na Kyong (Research & Development Division, Hyundai Motor Group) Shin, Hyun-Jae (Department of Biochemical and Polymer Engineering, Chosun University) |
1 | Araki C. 1959. Seaweed polysaccharides. In: Wolfrom ML (ed) Carbohydrate chemistry of substances of biological interest. Pergamon, London, pp 15-30. |
2 | Araki, T., Hayakawa, M., Lu, Z., Karita, S. and Morishita, T. 1998. Purification and characterization of agarases from a marine bacterium, Vibrio sp. PO-303. J. Mar. Biotechnol. 6, 260-265. |
3 | Chi, W. J., Chang, Y. K. and Hong, S. K. 2012. Agar degradation by microorganisms and agar-degrading enzymes. Appl. Microbiol. Biotechnol. 94, 917-930. DOI |
4 | Chi, W. J., Lee, C. R., Dugerjonjuu, S., Park, J. S., Kang, D. K. and Hong, S. K. 2015. Biochemical characterization of a novel iron-dependent GH16 -agarase, AgaH92, from an agarolytic bacterium Pseudoalteromonas sp. H9. FEMS Microbiol. Lett. 362(7), fnv035. |
5 | Chi, W. J., Park, da. Y., Seo, Y. B., Chang, Y. K., Lee, S. Y. and Hong, S. K. 2014. Cloning, expression, and biochemical characterization of a novel GH16 -agarase AgaG1 from Alteromonas sp. GNUM-1. Appl. Microbiol. Biotechnol. 98(10), 4545-4555. DOI |
6 | Cregg, J. M., Cereghino, J. L., Shi, J. and Higgins, D. R. 2000. Recombinant Protein Expression in Pichia pastoris. Mol. Biotechnol. 6(1), 23-52. |
7 | Cui, F., Dong, S, Shi, X., Zhao, X. and Zhang, X. H. 2014. Overexpression and characterization of a novel the rmostable -agarase YM01-3, from marine bacterium Catenovulum agarivorans YM01(T). Mar. Drugs. 12(5), 2731-2747. DOI |
8 | Dong, J., Hashikawa, S., Konishi, T., Tamaru, Y. and Araki, T. 2006. Cloning of the novel gene encoding beta-agarase C from a marine bacterium, Vibrio sp. strain PO-303, and characterization of the gene product. Appl. Environ. Microbiol. 72(9), 6399-6401. DOI |
9 | Dong, J., Tamaru, Y. and Arakia T. 2007. A unique beta-agarase, AgaA, from a marine bacterium, Vibrio sp. strain PO-303. Appl. Microbiol. Biotechnol. 74(6), 1248-1255. DOI |
10 | Dong, J., Tamaru, Y. and Araki, T. 2007. Molecular cloning, expression, and characterization of a beta-agarasegene, agaD, from a marine bacterium, Vibrio sp. strain PO-303. Biosci. Biotechnol. Biochem. 71(1), 38-46. DOI |
11 | Duckworth, M. and Yaphe, W. 1971. The structure of agar: Part I. Fractionation of a complex mixture of polysaccharides. Carbohydr. Res. 16, 189-197. DOI |
12 | Ekborg, N. A., Taylor, L. E., Longmire, A. G., Henrissat, B., Weiner, R. M. and Hutcheson, S.W. 2006. Genomic and proteomic analyses of the agarolytic system expressed by Saccharophagus degradans2-40. Appl. Environ. Microbiol. 72(5), 3396-3405. DOI |
13 | Hsu, P. H., Wei, C. H., Lu, W. J., Shen, F., Pan, C.L. and Lin, H. T. 2015. Extracellular production of a novel endo--agarase AgaA from Pseudomonas vesicularis MA103 that cleaves agarose into neoagarotetraose and neoagarohexaose. Int. J. Mol. Sci. 16(3), 5590-5603. DOI |
14 | Fu, X. and Kim, S. 2010. Agarases: review of major sources, categories, purification method, enzyme characteristics and application. Mar. Drugs. 8, 200-218. DOI |
15 | Gosalbes, M. J., Esteban, C. D., Galan, J. L. and Perez-Martinez, G. 2000. Integrative food-grade expression system based on the lactose regulon of Lactobacillus casei. Appl. Environ. Microbiol. 66(11), 4822-4828. DOI |
16 | Hou, Y., Chen, X., Chan, Z and Zeng, R. 2015. Expression and characterization of a thermostable and pH-stable -agarase encoded by a new gene from Flammeovirga pacifica WPAGA1. Process Biochem. 50, 1068-1075. DOI |
17 | Jam, M., Flament, D., Allouch, J., Potin, P., Thion, L., Kloareg, B., Czjzek, M., Helbert, W., Michel, G. and Barbeyron, T. 2005. The endo-beta-agarases AgaA and AgaB from the marine bacterium Zobellia galactanivorans: two paralogue enzymes with different molecular organizations and catalytic behaviours. Biochem. J. 385, 703-713. DOI |
18 | Jeon, M. J., Kim, A. R., Lee, D. G. and Lee, S. H. 2012. Cloning, Expression, and Characterization of a Novel GH-16 -Agarase from Agarivorans sp. JA-1. Kor. J. Life Science. 22(11), 1545-1551. DOI |
19 | Kim, H. T., Lee, S., Lee, D., Kim, H. S., Bang, W. G., Kim, K. H. and Choi, I. G. 2010. Overexpression and molecular characterization of Aga50D from Saccharophagus degradans2-40: an exo-type beta-agarase producing neoagarobiose. Appl. Microbiol. Biotechnol. 86(1), 227-34. DOI |
20 | Kobayashi, R., Takisada, M., Suzuki, T., Kirimura, K. and Usami, S. 1997. Neoagarobiose as a novel moisturizer with whitening effect. Biosci. Biotechnol. Biochem. 61, 162-163. DOI |
21 | Lee, D. G., Jang, M. K., Lee, O. H., Kim, N. Y., Ju, S. A. and Lee, S. H. 2008. Over-production of a glycoside hydrolase family 50 -agarase from Agarivorans sp. JA-1 in Bacillus subtilis and the whitening effect of its product. Biotechnol. Lett. 30, 911-918. DOI |
22 | Lee, D. G., Jeon, M. J. and Lee, S. H. 2012. Cloning, expression, and characterization of a glycoside hydrolase family118 beta-agarase from Agarivorans sp. JA-1. J. Microbiol. Biotechnol. 22(12), 1692-1697. DOI |
23 | Lee, D. G., Park, G. T., Kim, N. Y., Lee, E. J., Jang, M. K., Shin, Y. G., Park, G. S., Kim, T. M., Lee, J. H., Lee, J. H., Kim, S. J. and Lee, S. H. 2006. Cloning, expression, and characterization of a glycoside hydrolase family 50 beta-agarase from a marine Agarivoransisolate. Biotechnol. Lett. 28(23), 1925-1932. DOI |
24 | Lee, Y., Oh, C., De, Zoysa M., Kim, H., Wickramaarachc hi, W. D., Whang, I., Kang, D. H., and Lee, J. 2013. Molecular cloning, overexpression, and enzymatic characterization of glycosyl hydrolase family16 -Agarase from marine bacterium Saccharophagus sp. AG21 in Escherichia coli. J. Microbiol. Biotechnol. 23(7), 913-922. DOI |
25 | Li, G., Sun, M., Wu, J., Ye, M., Ge, X., Wei, W., Li, H. and Hu, F. 2015. Identification and biochemical characterization of a novel endo-type -agarase AgaW from Cohnella sp. strain L GH. Appl. Microbiol. Biotechnol. 99(23), 10019-10029. DOI |
26 | Li, J. and Sha, Y. 2015. Expression and enzymatic characterization of a cold-adapted -agarase from Antarctic bacterium Pseudoalteromonas sp. NJ21. Chinese J. Oceanol. Limnol. 33(2), 319-327. DOI |
27 | Long, M., Yu, Z. and Xu, X. 2010. A novel beta-agarase with high pH stability from marine Agarivorans sp. LQ48. Mar. Biotechnol. 12(1), 62-69. DOI |
28 | Liao, L., Xu, X. W., Jiang, X. W., Cao, Y., Yi, N., Huo, Y. Y., Wu, Y. H., Zhu, X. F., Zhang, X. Q. and Wu, M. 2011. Cloning, expression, and characterization of a new beta-agarase from Vibrio sp. strain CN41. Appl. Environ. Microbiol. 77(19), 7077-7079. DOI |
29 | Lin, B., Lu, G., Zheng, Y., Xie, W., Li, S. and Hu, Z. 2012. Gene cloning, expression and characterization of a neoagarotetraose-producing -agarase from the marine bacterium Agarivorans sp. HZ105. World J. Microbiol. Biotechnol. 28(4), 1691-1697. DOI |
30 | Liu, N., Mao, X., Yang, M., Mu, B. and Wei, D. 2014. Genecloning, expression and characterisation of a new -agarase, AgWH50C, producing neoagarobiose from A garivorans gilvus WH0801. World J. Microbiol. Biotechnol. 30(6), 1691-1698. DOI |
31 | Lopes, T. S., Klootwijk, J., Veenstra, A. E., van der Aar, P. C., van Heerikhuizen, H., Raue, H. A. and Planta, R. J. 1989. High-copy-number integration into the ribosomal DNA of Saccharomyces cerevisiae: a new vector for high-level expression. Gene. 79(2), 199-206. DOI |
32 | Lu, X., Chu, Y., Wu, Q., Gu, Y., Han, F. and Yu, W. 2009. Cloning, expression and characterization of a new agarase-encoding gene from marine Pseudoalteromonas sp. Biotechnol Lett. 31(10), 1565-1570. DOI |
33 | Morrice, L. M., McLean, M. W., Long, W. F. and Williamson, F. B. 1983. Beta-agarases I and II from Pseudomonas atlantica. Substrate specificities. Eur. J. Biochem. 137(1-2), 149-154. DOI |
34 | Potin, P., Richard, C., Rochas, C. and Kloareg, B. 1993. Purification and characterization of the -agarase from Alteromonas agarlyticus (Cataldi) comb. nov., strain GJ1B. Eur. J. Biochem. 214, 599-607. DOI |
35 | Oh, C., Nikapitiya, C., Lee, Y., Whang, I., Kim, S. J., Kang, D. H. and Lee, J. 2010. Cloning, purification and biochemical characterization of beta agarase from the marine bacterium Pseudoalteromonas sp. AG4. J. Ind. Microbiol. Biotechnol. 37(5), 483-494. DOI |
36 | Oh. C., Nikapitiya, C., Lee, Y., Whang, I., Kang, D. H., Heo, S. J., Choi, Y. U. and Lee, J. 2010. Molecular cloning, characterization and enzymatic properties of a novel beta-agarase from a marine isolate Psudoalteromonas SP. AG52. Braz. J. Microbiol. 41(4), 876-889. DOI |
37 | Ohta, Y., Hatada, Y., Miyazaki, M., Nogi, Y., Ito, S. and Horikoshi, K. 2005. Purification and characterization of a novel -agarase from a Thalassomonas sp. Curr. Microbiol. 50, 212-216. DOI |
38 | Seo, Y. B., Lu, Y., Chi, W. J., Park, H. R., Jeong, K. J., Hong. S. K. and Chna. Y. K. 2014. Heterologous expression of a newly screened -agarase from Alteromonas sp. GNUM1 in Escherichia coli and its application for agarose degradation. Process Biochem. 49, 430-436. DOI |
39 | Seok, J. H., Kim, H. S., Hatada, Y., Nam, S. W. and Kim, Y. H. 2012. Construction of an expression system for the secretory production of recombinant -agarase in yeast. Biotechnol. Lett. 34(6), 1041-1049. DOI |
40 | Seok, J. H., Park, H. G., Lee, S. H., Nam, S. W., Jeon, S. J., Kim, J. H. and Kim Y. H. 2010. High level secretory expression of recombinant -agarase from Zobellia galactanivorans in Pichia pastoris. Kor. J. Microbiol. Biotechnol. 38(1), 40-45. |
41 | Temuujin, U., Chi, W. J., Chang, Y. K. and Hong, S. K. 2012. Identification and biochemical characterization of Sco3487 from Streptomyces coelicolor A3(2), an exoand endo-type -agarase-producing neoagarobiose. J. Bacteriol. 194(1), 142-149. DOI |
42 | Shi, Y. L., Lu, X. Z. and Yu W. G. A. 2008. A new -agarase from marine bacterium Janthinobacterium sp. SY12. World J. Microbiol. Biotechnol. 24, 2659-2664. DOI |
43 | Tao, X., Jing, W., Kim, K. S., Yu, A. and Lee, Y. C. 2008. Cloning, expression and characterization of -agarase gene from a marine bacterium, Pseudoalteromonas sp. JT-6. Kor. J. Life Science. 18(5), 625-630. DOI |
44 | Tawara, M., Sakatoku, A., Tiodjio, R. E., Tanaka, D. and Nakamura, S. 2015. Cloning and characterization of a novel agarase from a newly isolated bacterium Simiduia sp. strain TM-2 able to degrade various seaweeds. Appl. Biochem. Biotechnol. 177(3), 610-623. DOI |
45 | Temuujin, U., Chi, W. J., Lee, S. Y., Chang, Y. K. and Hong, S. K.2011. Overexpression and biochemical chara cterization of DagA from Streptomyces coelicolor A3(2): an endo-type -agarase producing neoagarotetraose and neoagarohexaose. Appl. Microbiol. Biotechnol. 92(4), 749-759. DOI |
46 | Xie, W., Lin, B., Zhou, Z., Lu, G., Lun, J., Xia, C., Li, S. and Hu, Z. 2013. Characterization of a novel -agarase from an agar-degrading bacterium Catenovulum sp. X3. Appl. Microbiol. Biotechnol. 97(11), 4907-4915. DOI |
47 | Yang, J. I., Chen, L. C., Shih, Y. Y., Hsieh, C., Chen, C. Y., Chen, W. M. and Chen, C. C. 2011. Cloning and characterization of -agarase AgaYT from Flammeovirgayae yamensisstrain YT. J. Bacteriol. 112(3), 225-232. |
48 | Zhang, W. W. and Sun, L. 2007. Cloning, characterization, and molecular application of a beta-agarase gene from Vibrio sp. strain V134. Appl. Environ. Microbiol. 73(9), 2825-2831. DOI |