1 |
Steinemann M, Steinemann S (1997) The enigma of Y chromosome degeneration: TRAM, a novel retrotransposon is preferentially located on the Neo-Y chromosome of Drosophila miranda. Genetics 145: 261-266.
|
2 |
Bae YA, Moon SY, Kong Y, Cho SY, Rhyu MG (2001) CsRn1, a noble active retrotransposon in a parasitic trematode, Clonorchis sinensis, discloses a new phylogenetic clade of Ty3/gypsy-like LTR retrotransposons. Mol Biol Evol 18:1474-1483.
|
3 |
Boissinot S, Chevret P, Furano AV (2000) L1(LINE-1) retrotransposon evolution and amplification in recent human history. Mol Biol Evol 17: 915-928.
|
4 |
Charlesworth B, Jarne P, Assimacopoulos S (1994) The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. III. Element abundances in heterochromatin. Genet Res 64: 183-197.
|
5 |
Chun J (2001) PHYDIT. Version 3.1 (available at http://plaza.snu.ac.kr/-jchun/phydit/).
|
6 |
SanMiguel P, Tikhonov A, Jin YK, et al. (1996) Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
|
7 |
Boeke JD, Stoye JP (1997) Retrotransposons, endogenous retroviruses, and the evolution of retroelements. In Retroviruses, Coffin JM, Hughes SH, Varmus HE (eds.). p343-435, Cold Spring Harbor Laboratory Press, New York, USA.
|
8 |
Nikaido M, Rooney AP, Okada N (1999) Phylogenetic relationships among cetartiodactyls based on insertions of short and long interspersed elements: hippopotamuses are the closest extant relatives of whales. Proc Natl Acad Sci USA 96: 10261-10266.
|
9 |
Malik HS, Eickbush TH (2001) Phylogenetic analysis of ribonuclease H domains suggests a late, chimeric origin of LTR retrotransposable elements and retroviruses. Genome Res 11: 1187-1197.
|
10 |
Xiong Y, Eickbush TH (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J 9: 3353-3362.
|
11 |
Petrov DA, Sangster TA, Johnston JS, Hartl DL, Shaw KL (2000) Evidence for DNA loss as a determinant of genomic size. Science 287: 1060-1062.
|
12 |
Malik HS, Burke WD, Eickbush TH (1999) The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol 16: 793-805.
|
13 |
Medstrand P, Mager DL (1998) Human-specific integrations of the HERV-K endogenous retrovirus family. J Virol 72: 9782-9787.
|
14 |
Dangel AW, Baker BJ, Mendoza AR, Yu CY(1995) Complement component of C4 gene intron 9 as a phylogenetic marker for primates: long terminal repeats of the endogenous retrovirus ERV-K (C4) are a molecular clock of evolution. Immunogenetics 42: 41-52.
|
15 |
Malik HS, Eickbush TH (1999) Modular evolution of the integrase domain in the Ty3/Gypsy class of LTR retrotransposons. J Virol 73: 5186-5190.
|
16 |
Finnegan DJ (1989) Eukaryotic transposable elements and genome evolution. Trends Genet 5: 103-107.
|
17 |
Boeke JD, Garfinkel DJ, Styles CA, Fink GR (1985) Tyelements transpose through an RNA intermediate. Cell 40: 491-500.
|
18 |
Lonnig WE, Saedler H (1997) Plant transposons: contributors to evolution? Gene 205: 245-253.
|
19 |
Ganguly R, Swanson KD, Ray K, Krishnan R (1992) A Bam HI repeat is predominantly associated with the degenerating neo-Y chromosome of Drosophila miranda but absent in the Drosophila melanogaster genome. Proc Natl Acad Sci USA 89: 1340-1344.
|
20 |
Biessmann H, Kasravi B, Jakes K, Bui T, Ikenaga K, Mason JM (1993) The genomic organization of Het-A retroposons in Drosophila melanogaster. Chromosoma 102:297-305.
|
21 |
Clough JE, Foster JA, Barnett M, Wichman HA (1996) Computer simulation of transposable element evolution: random template and strict master models. J Mol Evol 42: 52-58.
|
22 |
Petrov DA, Lozovskaya ER, Hartl DL (1996) High intrinsic rate of DNA loss in Drosophila. Nature 384: 346-349.
|
23 |
Varmus H, Brown P (1989) Retroviruses. In Mobile DNA, Berg DE, Howe MH (eds.). p53-108, American Society of Microbiology, Washington DC, USA.
|
24 |
Pouteau S, Huttner E, Grandbastien MA, Caboche M (1991) Specific expression of the tobacco Tnt1 retrotransposon in protoblasts. EMBO J 10: 1911-1918.
|
25 |
Junakovic N, Terrinoni A, Di Franco C, Vieira C, Loevenbruck C (1998) Accumulation of transposable elements in the heterochromatin and on the Y chromosome of Drosophila simulans and Drosophila melanogaster. J Mol Evol 46: 661-668.
|
26 |
Whitelaw E, Martin DI (2001) Retrotransposons as epigenetic mediators of phenotypic variation in mammals. Nat Genet 27: 361-365.
|
27 |
Charlesworth B, Charlesworth D (1995) Transposable elements in inbreeding and outbreeding populations. Genetics 140: 415-417.
|
28 |
Li WH, Gu Z, Wang H, Nekrutenko A (2001) Evolutionary analyses of the human genome. Nature 409: 847-849.
|