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http://dx.doi.org/10.5536/KJPS.2011.38.2.081

Genetic Composition of Korean Native Chicken Populations - National Scale Molecular Genetic Evaluation Based on Microsatellite Markers  

Lee, Poong-Yeon (National Institute of Animal Science, RDA)
Yeon, Seong-Heum (National Institute of Animal Science, RDA)
Kim, Jae-Hwan (National Institute of Animal Science, RDA)
Ko, Yeoung-Gyu (National Institute of Animal Science, RDA)
Son, Jun-Kyu (National Institute of Animal Science, RDA)
Lee, Hee-Hoon (Korean Long Tail Chicken Farm)
Cho, Chang-Yeon (National Institute of Animal Science, RDA)
Publication Information
Korean Journal of Poultry Science / v.38, no.2, 2011 , pp. 81-87 More about this Journal
Abstract
The study was conducted to select and optimize microsatellite (MS) markers for evaluate Korean Native Chicken (KNC) breeds in order to provide standard for the classification and breed definition of the indigenous breeds. The study also aimed to characterize and classify each KNC populations for inventory and management of avian genetic resources. A total of 462 chickens from 11 populations of chicken breeds including eight KNC breeds and three commercial chicken breeds were analyzed with 19 MS markers. KNC breeds, especially Long-Tail Chicken breeds, formed separate cluster from those commercial chicken breeds. Genetic distances between KNC populations (0.11~0.18) were relatively shorter. Genetic uniformity of KNC (except KNCR breed) (0.86~0.88) were higher than that of commercial breeds (except Cornish) (0.95~0.97). On the other hand, genetic uniformity of KNC Long Tail (KNCLT) were relatively higher (0.91~0.97). The result can be used to evaluate and manage animal genetic resources at national scale.
Keywords
Korean Native Chicken; heterozygosity; microsatellite; Long-Tail Chicken;
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Times Cited By KSCI : 3  (Citation Analysis)
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1 Vignal A, Milan D, SanCristobal M, Eggen A 2002 A review on SNP and other types of molecular markers and their use in animal genetics. Genet Sel Evol 34: 275-305.   DOI   ScienceOn
2 Yoon DH, Kong HS, Oh JD, Lee JH, Cho BW, Kim JD, Jeon KJ, Jo CY, Jeon GJ, Lee HK 2005 Establishment of an individual identification system based on microsatellite polymorphisms in Korean cattle (Hanwoo). Asian-Aust J Anim Sci 18:762-766.   DOI
3 박찬호 오재돈 김인영 박경도 전광주 이학교 공홍식 2010 토 종닭 순계와 실용계의 유전적 특성 및 품종식별력 분석. 생명과학회지 20:1086-1092.
4 Falush D, Stephens M, Pritchard JK 2003 Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies. Genetics 164:1567-1587.
5 Felsenstein J 1993 PHYLIP (Phylogeny inference package) Version 3.5c.
6 Han S-H, Shin K-Y, Lee S-S, Ko M-S, Jeong D-K, Jeon J-T, Cho I-C 2008 Effects of ADCYP1R1, FABP3, FABP4, MC4R, MYL2 genotypes on growth traits in F2 population between Landrace and Jeju Native Black Pig. J Anim Sci Tech 52: 621-632.
7 Kim S-W, Li X, Lee Y-M, Kim J-J, Kim T-H, Choi B-H, Kim K-S 2010 Development of SNP markers for domestic pork traceability. J Anim Sci Tech 52:91-96.   과학기술학회마을   DOI   ScienceOn
8 Miller SA, Dykes DD, Polesky HF 1988 A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16: 1215.
9 Nei M 1973 Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci USA 70:3321-3323.   DOI
10 Ota T 1993 DISPAN: Genetic Distance and Phylogenetic Analysis. Pennsylvania State University
11 Park SDE 2001 Trypanotolerance in West African cattle and the population genetic effects of selection. Ph. D. Thesis, University of Dublin.
12 Pritchard JK, Stephens M, Donnelly P 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
13 Saitou N, Nei M 1987 The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.