Browse > Article
http://dx.doi.org/10.5536/KJPS.2011.38.1.005

Multiple Maternal Origins of Korean Native Chicken Based on the mtDNA D-loop Variation  

Cho, Chang-Yeon (National Institute of Animal Science, RDA)
Lee, Pung-Yeon (National Institute of Animal Science, RDA)
Ko, Yeoung-Gyu (National Institute of Animal Science, RDA)
Kim, Hak-Kyu (National Institute of Animal Science, RDA)
Park, Mi-Na (National Institute of Animal Science, RDA)
Yeon, Seung-Hum (National Institute of Animal Science, RDA)
Publication Information
Korean Journal of Poultry Science / v.38, no.1, 2011 , pp. 5-12 More about this Journal
Abstract
In this study, we analyzed the mitochondrial DNA D-loop region of Korean native chicken to clarify their phylogenetic relationships, possible maternal origin and routes of introduction into Korea. A 1231-1232 bp DNA fragment from the mtDNA D-loop region was sequenced in 315 chickens from 11 populations, Thirty-five variable sites that defined 21 haplotyes were observed. In Korean native chicken, diversity accounted for 90% of the variation, little differentiation among the strains. The 21 haplotypes clustered into 5 clades which were A, B, C, D and E. These results indicate that Korean chickens were derived from China with multiple origins.
Keywords
D-loop; Korean native chicken; maternal lineage; mitochondria; phylogenetic analysis;
Citations & Related Records
Times Cited By KSCI : 2  (Citation Analysis)
연도 인용수 순위
1 Zhou B, Chen SY, Zhu Q, Yao YH, Liu YP 2010. Martilineal components and genetic relationship of silkies from China and Japan. J Poultry Sci 47(1):22-27.   DOI
2 Librado P, Rozas J 2009 DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25(11):1451-1452.   DOI   ScienceOn
3 Liu, YP, Wu GS, Yao YG, Miao YW, Luikart G, Baig M, Beja-pereira A, Ding ZL, Palanichamy MG, Zhang YP 2006 Multiple maternal origins of chickens: Out of the Asian jungles. Mol Phy Evol 38(1):12-19.   DOI   ScienceOn
4 Lynch M, Crease TJ 1990 The analysis of population survey data on DNA sequence variation. Mol Biol Evol 7:377-394.
5 Mwacharo JM, Nomura K, Hanada H, Jinalin H, Hanotte O, Amano T 2007 Genetic relationships among Kenyan and other East African indigenous chickens. Anim Genet 38(5):485-490.   DOI   ScienceOn
6 Niu D, Fu Y, Lua J, Ruan H, Yu XP, Chen G, Zhang YP 2002 The origin and genetic diversity of Chinese native chicken breeds. Biochem Genet 40(5):163-174.   DOI   ScienceOn
7 Oka T, Ino Y, Nomura K, Kawashima S, Kuwayama T, Hanada H, Amano T, Tkada M, Takahata N, Hayashi Y, Akishinonomiya F 2007 Analysis of mtDNA sequences shows Japanese native chickens have multiple origins. Anim Genet 38(3):287-293.   DOI   ScienceOn
8 Revay T, Bodzsar N, Mobegi VE, Hanotte O, Hidas A 2010 Origin of Hungarian indigenous chicken breeds inferred from mitochondrial DNA D-loop sequences. Anim Genet 41(5):548-550.   DOI   ScienceOn
9 Rozas J, Sanchez-DelBarrio JC, messeguer X, Rozas R 2003 DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19(18):2496-2497.   DOI   ScienceOn
10 Schlotterer C 2004 The evolution of molecular markers-just a matter of fashion? Nat Rev Genet 5(1):63-69.   DOI   ScienceOn
11 Tajima F 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123(3):585-595.
12 West B, Zhou BX 1988. Did chicken go north? New evidence for domestication. J Archaeol Sci 15:515-533.   DOI
13 Eriksson J, Larson G, Gunnarsson U, Bed'hom B, Tixier-Boichard M, Strömstedt L, Wright D, Jungerius A, Vereijken A, Randi E, Jensen P, Andersson L 2008 Identification of the yellow skin gene reveals a hybrid origin of the domestic chicken. PLoS Genet 4(2):e1000010.   DOI   ScienceOn
14 Felsenstein J 1989 PHYLIP. Phylogeny interface package (version 3.2). Cladistics 5:164-166.
15 Fumihito A, Miyake T, Sumi SI, Tkata M, Ohno S, Kondo N 1994 One subspecies of the red junglefowl (Gallus gallus gallus) suffices as the matriarchic ancestor of all domestic breeds. Proc Natl Acad Sci USA 91(26):12505-12509.   DOI
16 Hoque MR, Jung KC, Park BK, Choi KD, Lee JH 2009 Genetic variability of mtDNA D-loop region in Korean native chickens. Kor J Poult Sci 36(4):323-328.   과학기술학회마을   DOI   ScienceOn
17 Fumihito A, Miyake T, Takada M, Shingu R, Endo T, Gojobori T, Kondo N, Ohno S 1996 Monophyletic origin and unique dispersal patterns of domestic fowls. Proc Natl Acad Sci USA 93(13):6792-6795.   DOI
18 Groeneveld LF, Lenstra JA, Eding H, Toro MA, Scherf B, Pilling D, Negrini R, Finlay EK, Jianlin H, Groeneveld E, Weigend S 2010 Genetic diversity in farm animals-A review. Anim Genet 41:6-31.   DOI   ScienceOn
19 Hillel J, Groenen M, Tixier-Boichard M, Koorl AB, David L, Kirzhner VM, Burke T, Barrre-Dirie A, Crooijmans RP, Elo K, Feldman MW, Freidlin PJ, Maki-Tanila A, Oortwijn M, Thoson P, Vignal A, Wimmers K, Weigend S 2003 Biodiversity of 52 chicken populations assessed by microsatellite typing of DNA pools. Genet Sel Evol 35(5):533-557.   DOI   ScienceOn
20 Kanginakudru S, Metta M, Jakti RD, Nagaraju J 2008 Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken. BMC Evol Biol 8:174.   DOI   ScienceOn
21 Lee YJ, Bhuiyan MSA, Chung HJ, Jung WY, Choi KDm, Jang BGm, Peak WK, Jeon JT, Park CS, Lee JH 2007 Mitochondrial DNA diversity of Korean ogol chicken. Asian-Aust J Anim Sci 20(4):477-481.   DOI
22 Berthouly-Salazar C, Rognon X, Van TN, Gely M, Chi CV, Tixier-Boichard M, Bed'Hom B, Bruneau N, Verrier E, Maillard JC, Michaux JR 2010 Vietnamese chickens: A gate towards Asian genetic diversity. BMC Genet 11(1):53.
23 Bandelt HJ, Forster P, Sykes BC, Richards MB 1995 Mitochondrial portraits of human populations using median networks. Genetics 141(2):743-753.