In silico Analysis of Natural Compounds as Modulators of Type I Collagen |
Narayanaswamy, Radhakrishnan
(Department of Nutrition and Dietetics, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia)
Wai, Lam Kok (Faculty of Pharmacy, Universiti Kebangsaan Malaysia (UKM)) Esa, Norhaizan Mohd (Department of Nutrition and Dietetics, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia) Ismail, Intan Safinar (Laboratory of Natural Products, Institute of Bioscience (IBS), Universiti Putra Malaysia (UPM)) |
1 | M. H. Miller and H. A. Scheraga, "Calculation of the structures of collagen models. Role of interchain interactions in determining the triple-helical coiled-coil conformation. I. Poly (glycyl-prolyl-hydroxy-prolyl)", Journal of Polymer Science Part C: Polymer Symposia, Vol. 54, pp. 171-200, 1976. |
2 | K. A. Piez and B. L. Trus, "Sequence regularities and packing of collagen molecules", J. Mol. Biol., Vol. 122, pp. 419-432, 1978. DOI |
3 | J. M. Chen, C. E. Kung, S. H. Feairheller, and E. M. Brown, "An energetic evaluation of a "Smith" collagen microfibril model", Journal of Protein Chemistry, Vol. 10, pp. 535-552, 1991. DOI |
4 | P. X. Qi and E. M. Brown, "Molecular modeling of N-terminal telopeptides of bovine type I collagen", J. Am. Leather Chem. As., Vol. 97, pp. 235-242, 2002. |
5 | E. R. H. S. S. Ediriweera and N. Y. S. Premarathna, "Medicinal and cosmetic uses of bee's honey-A review", An international quarterly journal of research in Ayurveda, Vol. 33, pp. 178-182, 2012. DOI |
6 | S. Z. Hussein, K. M. Yusoff, S. Makpol, and Y. A. M. Yusof, "Gelam honey inhibits the production of proinflammatory, mediators NO, PGE 2, , and IL-6 in carrageenan-induced acute paw edema in rats", Evid-Based Compl. Alt., Vol. 2012, pp. 109636, 2012. |
7 | M. Shahjahan, A. Halim Nurul, and N. J. Noor Izani, "Antimicrobial Properties of 'Kelulut' (Trigona Spp) Honey", Malaysian Journal of medical Sciences, Vol. 14, pp. 107-108, 2007. |
8 | M. I. Zainol, K. M. Yusoff, and M. Y. M. Yusof, "Antibacterial activity of selected Malaysian honey", BMC Complem. Altern. M., Vol.13, pp. 129, 2013. DOI |
9 | G. V. Rao, T. Mukhopadhyay, T. Annamalai, N. Radhakrishnan, and M. R. Sahoo, "Chemical constituents and biological studies of Origanum vulgare Linn", Pharmacognosy research, Vol. 3, pp. 143-145, 2011. DOI |
10 | N. Radhakrishnan, L. K. Wai, and I. S. Ismail, "Molecular docking analysis of natural compounds as Human neutrophil elastase (HNE) inhibitors", Journal of Chemical and Pharmaceutical Research, Vol. 5, pp. 337-341, 2013. |
11 | N. Radhakrishnan, A. Gnanamani, S. Sangeetha, G. Rameshkumar, and A. B. Mandal, "Bioinformatics in crosslinking chemistry of collagen with selective cross linkers", BMC Research Notes, Vol. 4, pp. 399, 2011. DOI |
12 | G. Wu, D. H. Robertson, C. L. Brooks, and M. Vieth, "Detailed analysis of grid-based molecular docking: A case study of CDOCKER-A CHARMm? based MD docking algorithm", J. Comput. Chem., Vol. 24, pp. 1549-1562, 2003. DOI |
13 | S. V. Sandhu, S. Gupta, H. Bansal, and K. Singla, "Collagen in health and disease", Journal of Orofacial Research, Vol. 2, pp. 153-159, 2012. DOI |
14 | L. Suguna, G. Chandrakasan, and K. T. Joseph, "Influence of honey on collagen metabolism during wound healing in rats", J. Clin. Biochem. Nutr., Vol. 13, pp. 7-12, 1992. DOI |
15 | R. A. Milch and R. A. Murray, "Studies of alcaptonuria: adsorption of homogentisic acid solutions on collagen chromatographic columns", Arthritis & Rheumatism, Vol. 4, pp. 268-274, 1961. DOI |
16 | T. A. McCaffrey, K. B. Pomerantz, T. A. Sanborn, A. M. Spokojny, B. Du, M. H. Park, J. E. Folk, A. Lamberg, K. I. Kivirikko, D.J. Falcone, S. B. Mehta, and H. M. Hanauske-Abel, "Specific inhibition of eIF-5A and collagen hydroxylation by a single agent: Antiproliferative and fibrosuppressive effects on smooth muscle cells from human coronary arteries", J. Clin. Invest., Vol. 95, pp. 446-455, 1995. DOI |
17 | B. Madhan, A. Dhathathreyan, V. Subramanian, and T. Ramasami, "Investigations on geometrical features in induced ordering of collagen by small molecules", J. Chem. Sci., Vol. 115, pp. 751-766, 2003. DOI |
18 | D. Baronas?Lowel, J. L. Lauer?Fields and G. B. Fields, "Defining the roles of collagen and collagen-Like proteins within the proteome", J. Liq. Chromatogr. R. T., Vol. 26, pp. 2225-2254, 2003. DOI |
19 | G. N. Ramachandran and G. Kartha, "Structure of collagen", Nature, Vol. 176, pp. 593-595, 1955. DOI |
20 | C. M. Ditre, T. D. Griffin, G. F. Murphy, H. Sueki, B. Telegan, W. C. Johnson, R. J. Yu, and E. J. Van Scott, "Effects of -hydroxy acids on photoaged skin: A pilot clinical, histologic, and ultrastructural study", J. Am. Acad. Dermatol., Vol. 34, pp. 187-195, 1996. DOI |
21 | J. Lee, E. Jung, Y. Kim, J. Park, J. Park, S. Hong, J. Kim, C. Hyun, Y. S. Kim, and D. Park, "Asiaticoside induces human collagen I synthesis through TGF beta receptor I kinase (TbetaRI kinase)-independent Smad signaling", Planta Med., Vol. 72, pp. 324-328, 2006. DOI |
22 | L. Cui, Y.-Y. Liu, T. Wu, C.-M. Ai, and H.-Q. Chen, "Osteogenic effects of D (+) , 4-dihydroxyphenyl lactic acid (salvianic acid A, SAA) on osteoblasts and bone marrow stromal cells of intact and prednisone-treated rats", Acta Pharmacol. Sin., Vol. 30, pp. 321-332, 2009. |
23 | J. T. Koivunen, L. Nissinen, A. Juhakoski, M. Pihlavisto, A. Marjamaki, J. Huuskonen, and O. T. Pentikainen, "Blockage of collagen binding to integrin : structure-activity relationship of protein-protein interaction inhibitors", Med. Chem. Comm., Vol. 2, pp. 764-770, 2011. DOI |
24 | T. Mitra, G. Sailakshmi, A. Gnanamani, S. T. K. Raja, T. Thiruselvi, V. M. Gowri, N. V. Selvaraj, G. Ramesh, and A. B. Mandal, "Preparation and characterization of a thermostable and biodegradable biopolymers using natural cross-linker", Int. J. Biol. Macromol., Vol. 48, pp. 276-285, 2011. DOI |
25 | B. A. T. Hart, J. M. Simons, K. S. Shoshan, N. P. M. Bakker, and R. P. Labadie, "Antiarthritic activity of the newly developed neutrophil oxidative burst antagonist apocynin", Free Radical Bio. Med., Vol. 9, pp. 127-131, 1990. |