Browse > Article
http://dx.doi.org/10.29220/CSAM.2022.29.5.499

Real-time prediction for multi-wave COVID-19 outbreaks  

Zuhairohab, Faihatuz (Department of Mathematics, Gadjah Mada University)
Rosadi, Dedi (Department of Mathematics, Gadjah Mada University)
Publication Information
Communications for Statistical Applications and Methods / v.29, no.5, 2022 , pp. 499-512 More about this Journal
Abstract
Intervention measures have been implemented worldwide to reduce the spread of the COVID-19 outbreak. The COVID-19 outbreak has occured in several waves of infection, so this paper is divided into three groups, namely those countries who have passed the pandemic period, those countries who are still experiencing a single-wave pandemic, and those countries who are experiencing a multi-wave pandemic. The purpose of this study is to develop a multi-wave Richards model with several changepoint detection methods so as to obtain more accurate prediction results, especially for the multi-wave case. We investigated epidemiological trends in different countries from January 2020 to October 2021 to determine the temporal changes during the epidemic with respect to the intervention strategy used. In this article, we adjust the daily cumulative epidemiological data for COVID-19 using the logistic growth model and the multi-wave Richards curve development model. The changepoint detection methods used include the interpolation method, the Pruned Exact Linear Time (PELT) method, and the Binary Segmentation (BS) method. The results of the analysis using 9 countries show that the Richards model development can be used to analyze multi-wave data using changepoint detection so that the initial data used for prediction on the last wave can be determined precisely. The changepoint used is the coincident changepoint generated by the PELT and BS methods. The interpolation method is only used to find out how many pandemic waves have occurred in given a country. Several waves have been identified and can better describe the data. Our results can find the peak of the pandemic and when it will end in each country, both for a single-wave pandemic and a multi-wave pandemic.
Keywords
prediction; changepoint; Richards model; multi-wave; PELT; binary segmentation; COVID-19;
Citations & Related Records
Times Cited By KSCI : 4  (Citation Analysis)
연도 인용수 순위
1 Nguyen LH, Hoang MT, Nguyen LD, et al. (2021). Acceptance and willingness to pay for COVID-19 vaccines among pregnant women in Vietnam, Tropical Medicine and International Health, 26, 1303-1313.   DOI
2 Nishiura H and Chowell G (2009). The effective reproduction number as a prelude to statistical estimation of time-dependent epidemic trends, Mathematical and Statistical Estimation Approaches in Epidemiology, (pp. 103-121), Springer, Netherlands.
3 Ritchie H, Ortiz-Ospina E, Beltekian D, et al. (2021). Coronavirus pandemic (COVID-19), Our World in Data, Available from: https://ourworldindata.org/coronavirus.
4 Roberts DL, Rossman JS, and Jaric I (2021). Dating first cases of COVID-19, PLOS Pathogens, 17, e1009620, Available from: https://dx.plos.org/10.1371/journal.ppat.1009620   DOI
5 Roosa K, Lee Y, Luo R, et al. (2020). Short-term forecasts of the COVID-19 epidemic in Guangdong and Zhejiang, Journal of Clinical Medicine, 9, 596.
6 Wang X, Liu S, and Huang Y (2016). A study on the rapid parameter estimation and the grey prediction in Richards Model, Journal of Systems Science and Information, 4, 223-234.   DOI
7 Worldometer (2021). Coronavirus update (Live): cases and deaths from COVID-19 virus pandemic, Worldometers, (pp. 1), Worldometer, Available from: https://www.worldometers.info/coronavirus/
8 Wylie LL (2021). Cuba's response to COVID-19: lessons for the future, Journal of Tourism Futures, 7, 356-363.   DOI
9 Zuhairoh F and Rosadi D (2020). Real-time forecasting of the COVID-19 epidemic using the Richards model in South Sulawesi, Indonesia, Indonesian Journal of Science and Technology, 5, 456-462.   DOI
10 Zuhairoh F and Rosadi D (2022). Data-driven analysis and prediction of COVID-19 infection in Southeast Asia using a Phenomenological Model, Pakistan Journal of Statistics and Operation Research, 18, 59-69.   DOI
11 Zuhairoh F, Rosadi D, and Effendie AR (2021). Determination of basic reproduction numbers using transition intensities multi-state SIRD Model for COVID-19 in Indonesia, Journal of Physics: Conference Series, 1821, 012050.
12 Zuhairoh F, Rosadi D, and Effendie AR (2022EL). Multi-state discrete-time Markov Chain SVIRS Model on the spread of COVID-19, Engineering Letters, 30, 598-608.
13 Edwards B, Biddle N, Gray M, and Sollis K (2021). COVID-19 vaccine hesitancy and resistance: Correlates in a nationally representative longitudinal survey of the Australian population, PLoS ONE, 16, e0248892.
14 Maleki M, Mahmoudi MR, Wraith D, and Pho KH (2020a). Time series modelling to forecast the confirmed and recovered cases of COVID-19, Travel Medicine and Infectious Disease, 37, 101742.
15 Meier K, Glatz T, Guijt MC, et al. (2020). Public perspectives on protective measures during the COVID-19 pandemic in the Netherlands, Germany and Italy: A survey study, PLoS ONE, 15, e0236917.
16 Bozdogan H (2000). Akaike's information criterion and recent developments in information complexity, Journal of Mathematical Psychology, 44, 62-91.   DOI
17 Darmawan G, Rosadi D, and Ruchjana BN (2022). Hybrid model of singular spectrum analysis and ARIMA for seasonal time series data, CAUCHY-Jurnal Matematika Murni dan Aplikasi, 7, 302-315.   DOI
18 Eckley IA, Fearnhead P, and Killick R (2011). Bayesian Time Series Models, Cambridge: Cambridge University Press, New York, Analysis of changepoint models. In D. Barber, A. Cemgil, and S. Chiappa (Eds.), 205-224,
19 Feehan J and Apostolopoulos V (2021). Is COVID-19 the worst pandemic?, Maturitas, 149, 56-58.   DOI
20 Guven O, Eftekhar A, Kindt W, and Constandinou TG (2014). Realtime ECG baseline removal: An isoelectric point estimation approach, IEEE 2014 Biomedical Circuits and Systems Conference, BioCAS 2014 - Proceedings, Washington, D.C., 29-32.
21 Hsieh YH (2009). Richards Model: A simple procedure for Real-time prediction of outbreak severity, Modeling and Dynamics of Infectious Diseases, (pp. 216-236), Co-Published with higher education press, Singapore.
22 Hsieh YH and Cheng YS (2006). Real-time forecast of multiphase outbreak, Emerging Infectious Diseases, 12, 122-127.   DOI
23 James NA and Matteson DS (2014). ecp: An R package for nonparametric multiple changepoint analysis of multivariate data, Journal of Statistical Software, 62, 1-25.
24 Killick R and Eckley IA (2014). changepoint: An R package for changepoint analysis, Journal of Statistical Software, 58, 1-19.
25 Killick R, Fearnhead P, and Eckley IA (2012). Optimal detection of changepoints with a linear computational cost, Journal of the American Statistical Association, 107, 1590-1598.   DOI
26 Kim JE, Lee JH, Kang YG, Lee SH, Shin H, Ronnebeck N, Ronnebeck R, and Nam EW (2021). Depression in public officials during the COVID-19 pandemic in Paraguay: a web-based study, BMC Public Health, 21, 1835, Available from: https://doi.org/10.1186/s12889-021-11860-z   DOI
27 Haddawy P, Lawpoolsri S, Sa-Ngamuang C, et al. (2021). Effects of COVID-19 government travel restrictions on mobility in a rural border area of Northern Thailand: A mobile phone tracking study, PLoS ONE, 16, e0245842.
28 Leon UAP, Angel GCP, and Avila-Vales E (2020). A data driven analysis and forecast of an SEIARD epidemic model for COVID-19 in Mexico, Big Data and Information Analytics, 5, 14-28.   DOI
29 Lo SY, Li SCS, and Wu TY (2021). Exploring psychological factors for COVID-19 vaccination intention in Taiwan, Vaccines, 9, 764.
30 Ma L, Grant AJ, and Sofronov G (2020). Multiple changepoint detection and validation in autoregressive time series data, Statistical Papers, 61, 1507-1528.   DOI