Browse > Article
http://dx.doi.org/10.5351/CKSS.2006.13.1.039

A Bayesian Multiple Testing of Detecting Differentially Expressed Genes in Two-sample Comparison Problem  

Oh Hyun-Sook (Department of Applied Statistics, Kyungwon University)
Yang Wan-Youn (Department of Applied Statistics, Kyungwon University)
Publication Information
Communications for Statistical Applications and Methods / v.13, no.1, 2006 , pp. 39-47 More about this Journal
Abstract
The Bayesian approach to multiple testing procedure for one sample testing problem proposed by Scott and Berger (2003) is extended to two-sample comparison problem in microarray experiments. The prior distribution of each gene's mean for one sample is given conditionally on the corresponding gene's mean for the other sample. Posterior distributions of interesting parameters are derived and estimated based on an importance sampling method. A simulated example is given for illustration.
Keywords
microarray experiment; Bayesian multiple testing; importance sampling method;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Storey, J. (2002). A direct approach to false discovery rates. Journal of the Royal Statistical Society, Series B, Vol. 64, 479-498   DOI   ScienceOn
2 Scott, J. and Berger, J. (2003). An exploration of aspects of Bayesian multiple testing. Technical Report, Institute of Statistics and Decision Sciences, Duke University, Durham, Available from: http://www.stat.duke.edu/~berger/papers/multcomp.pdf
3 Efron, B., Tibshirani, R., Storey, J., Tusher, V. (2000). Empirical Bayes analysis of a microarray experiment. Journal of the American Statistical Association, Vol. 96, 1151-1160   DOI   ScienceOn
4 Benjamini, Y. and Hochberg, Y. (1995). Controlling the false discovery rate: A pratical and powerful approach to multiple testing. Journal of the Royal Statistical Society, Series B, Vol. 57, 289-300
5 Dudoit, S, Yang, Y., Callow, M., Speed, T. (2002). Statistical methods for identifying genes with differential expression in replicated cDNA microarray experiments. Statistica Sinica, Vol. 12, 111-139
6 Kerr, M. and Churchill, G. (2000). Analysis of variance for gene expression microarray data. Journal of Computational Biology, Vol. 7, 819-837   DOI   ScienceOn
7 Tusher, V., Tibshirani, Rand Chu, C. (2001), Significance analysis of microarrays applied to transcriptional responses to ionizing radiation. Proceedings of the National Academy of Sciences, Vol. 98, 5116-5121
8 Westfall, P. and Young, S. (1993). Resampling-Based Multiple Testing: Examples and Methods for P-value Adjustment, Wiley, New York
9 Yang, Y., Buckley, M. and Speed, T. (2001), Analysis of cDNA microarray images, Briefings in Bionformatics, Vol. 2, 341-349   DOI   ScienceOn