Browse > Article
http://dx.doi.org/10.5351/CKSS.2004.11.2.369

Recovery Levels of Clustering Algorithms Using Different Similarity Measures for Functional Data  

Chae, Seong San (Department of Information and Statistics, Daejeon University)
Kim, Chansoo (Department of Statistics, Oklahoma State University)
Warde, William D. (Department of Statistics, Oklahoma State university)
Publication Information
Communications for Statistical Applications and Methods / v.11, no.2, 2004 , pp. 369-380 More about this Journal
Abstract
Clustering algorithms with different similarity measures are commonly used to find an optimal clustering or close to original clustering. The recovery level of using Euclidean distance and distances transformed from correlation coefficients is evaluated and compared using Rand's (1971) C statistic. The C values present how the resultant clustering is close to the original clustering. In simulation study, the recovery level is improved by applying the correlation coefficients between objects. Using the data set from Spellman et al. (1998), the recovery levels with different similarity measures are also presented. In general, the recovery level of true clusters was increased by using the correlation coefficients.
Keywords
Agglomerative clustering algorithms; Correlation coefficients; Rand′s C statistic;
Citations & Related Records
Times Cited By KSCI : 1  (Citation Analysis)
연도 인용수 순위
1 Robust cluster analysis of microarray gene expression data with the number of clusters determined biologically /
[ Bickel, D.R. ] / Bioinformatics
2 A method to predict the number of clusters /
[ Chae, S.S.;Warde, W.D. ] / Journal of the Korean Statistical Society
3 Shrinkage-based smilarity metric for cluster analysis of microarray data /
[ Cherpinsky ,V.;Feng, J.;Rejali, M.;Mishra, B. ] / Proceeding of National Academy Sciences in USA   DOI   ScienceOn
4 Cluster analysis and display of genome-wide expression patterns /
[ Eisen, M.B.;Spellman, P.O.;Brown, P. O.;Botstein, D. ] / Proceeding of National Academy Sciences in USA
5 A method for comparing two hierarchical clusterings /
[ Fowlkes, E.B.;Mallows, C.L. ] / Journal of American Statistical Association   DOI   ScienceOn
6 Some distance properties of latent root and vector mehtods used in multivariate analysis /
[ Gower, J.C. ] / Biometrika   DOI
7 A mathematical comparison of the members of an infinite family of agglomerative clustering algorithms /
[ DuBien, J.L.;Warde, W.D. ] / The Canadian Journal of Statistics   DOI
8 Distinctive gene expression patterns in human mammary epithelial cells and breast cancers /
[ Perou, C.M.;Jeffrey, S.S.;Rijn, M.V.;Rees, C.A.;Eisen, M.B.;Ross, D.T.;Pergamenschikov, A.;Wiliams, C.R.;Zhu, S.X.;Lee, J.C.F.;Lashkari, D.;Shalon, D.;Brown, P.O.;Botstein, D. ] / Proceeding of National Academy Sciences in USA   DOI   ScienceOn
9 Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization /
[ Spellman, P.T.;Sherlock, G.;Zhang, M.Q.;Iyer, V.R.;Eisen, M.B.;Brown, P.O.;Botstein, D.;Futcher, B. ] / Molecular Biology of the Cell   DOI
10 Analysing gene expression data from DNA microarrays to identify candidate genes /
[ Wu, Thomas D. ] / Journal of Pathology   DOI   ScienceOn
11 Some distributional results concerning a comparative statistic used in cluster analysis /
[ DuBien, J.L.;Warde, W.D. ] / ASA Proceedings of the Social Statistics Section
12 A comparison of agglomerative clustering method with respect to noise /
[ DuBien, J.L.;Warde, W.D. ] / Communications in Statistics, Theory and Method   DOI   ScienceOn
13 Moments of Rand's C Statistic in cluster analysis /
[ DuBien, J.L.;Warde, W.D.;Chae, S.S. ] / Statistics & Probability Letters
14 Agglomerative hierarchical clustering of continuous variables based on mutual information /
[ Kojadinovic, I, ] / Computational Statistics & Data Analysis   DOI   ScienceOn
15 Transcriptional profiling of bone regeneration; insight into the molecular complexity of wound repair /
[ Hadjiargyrou, M.;Lombardo, F.;Zhao, S.;Ahrens, W.;Joo, J.;Ahn, H.;White, D.W.;Rubin, C.T. ] / Journal of Biological Chemistry   DOI   ScienceOn
16 /
[ Johnson, R.A.;Wichern, D.W. ] / Applied Multivariate Statistical Analysis(4th Edition)
17 Statistical methods for gene expression data /
[ Kim, Choongrak ] / The Korean Communications in Statistics
18 Objective criteria for the evaluation of clustering methods /
[ Rand, W.M. ] / Journal of the American Statistical in USA   DOI   ScienceOn