Development of PCR-RFLP Technique for Identify Several Members of Fusarium incarnatum-equiseti Species Complex and Fusarium fujikuroi Species Complex |
Pramunadipta, Syafiqa
(Faculty of Agriculture, Universitas Gadjah Mada)
Widiastuti, Ani (Departement of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada) Wibowo, Arif (Departement of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada) Suga, Haruhisa (Life Science Research Center, Gifu University) Priyatmojo, Achmadi (Departement of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada) |
1 | Diguta, C. F., Vincent, B., Guilloux-Benatier, M., Alexandre, H. and Rousseaux, S. 2011. PCR ITS-RFLP: a useful method for identifying filamentous fungi isolates on grapes. Food Microbiol. 28:1145-1154. DOI |
2 | Hafez, M., Abdelmagid, A., Adam, L. R. and Daayf, F. 2020. Specific detection and identification of Fusarium graminearum sensu stricto using a PCR-RFLP tool and specific primers targeting the translational elongation factor 1α gene. Plant Dis. 104:1076-1086. DOI |
3 | Jurado, M., Vazquez, C., Marin, S., Sanchis, V. and Gonzalez-Jaen, M. T. 2006. PCR-based strategy to detect contamination with mycotoxigenic Fusarium species in maize. Syst. Appl. Microbiol. 29:681-689. DOI |
4 | Kim, J.-S., Kang, N. J., Kwak, Y.-S. and Lee, C. 2017. Investigation of genetic diversity of Fusarium oxysporum f. sp. fragariae using PCR-RFLP. Plant Pathol. J. 33:140-147. DOI |
5 | Konstantinova, P. and Yli-Mattila, T. 2004. IGS-RFLP analysis and development of molecular markers for identification of Fusarium poae, Fusarium langsethiae, Fusarium sporotrichioides and Fusarium kyushuense. Int. J. Food Microbiol. 95:321-331. DOI |
6 | Leslie, J. F. and Summerell, B. A. 2006. The Fusarium Laboratory Manual. Blackwell Publishing, Iowa, USA. 388 pp. |
7 | Mule, G., Susca, A., Stea, G. and Moretti A. 2004. A species-specific PCR assay based on the calmodulin partial gene for identification of Fusarium verticillioides, F. proliferatum and F. subglutinans. Eur. J. Plant Pathol. 110:495-502. DOI |
8 | Pramunadipta, S., Widiastuti, A., Wibowo, A., Suga, H. and Priyatmojo, A. 2022. Identification and pathogenicity of Fusarium spp. associated with the sheath rot disease of rice (Oryza sativa) in Indonesia. J. Plant Pathol. 104:251-267. DOI |
9 | Suga, H., Kitajima, M., Nagumo, R., Tsukiboshi, T., Uegaki, R., Nakajima, T., Kushiro, M., Nakagawa, H., Shimizu, M., Kageyama, K. and Hyakumachi, M. 2014. A single nucleotide polymorphism in the translation elongation factor 1α gene correlates with the ability to produce fumonisin in Japanese Fusarium fujikuroi. Fungal Biol. 118:402-412. DOI |
10 | O'Donnell, K., Ward, T. J., Robert, V. A. R. G., Crous, P. W., Geiser, D. M. and Kang, S. 2015. DNA sequence-based identification of Fusarium: current status and future directions. Phytoparasitica 43:583-595. DOI |
11 | Rasmussen, H. B. 2012. Restriction fragment length polymorphism analysis of PCR-amplified fragments (PCR-RFLP) and gel electrophoresis: valuable tool for genotyping and genetic fingerprinting. In: Gel electrophoresis: principles and basics, ed. by S. Magdeldin, pp. 315-334. InTech Europe, Rijeka, Croatia. |
12 | Datta, S., Choudhary, R. G., Shamim, M. and Dhar, V. 2011. Polymorphism in the internal transcribed spacer (ITS) region of the ribosomal DNA among different Fusarium species. Arch. Phytopathol. Plant Prot. 44:558-566. DOI |
13 | Xia, J. W., Sandoval-Denis, M., Crous, P. W., Zhang, X. G. and Lombard, L. 2019. Numbers to names: restyling the Fusarium incarnatum-equiseti species complex. Persoonia 43:186-221. DOI |
14 | Hong, S.-Y., Kang, M. R., Cho, E.-J., Kim, H.-K. and Yun, S.-H. 2010. Specific PCR detection of four quarantine Fusarium species in Korea. Plant Pathol. J. 26:409-416. DOI |
15 | Kumar, S., Stecher, G., Li, M., Knyaz, C. and Tamura, K. 2018. MEGA X: molecular evolutionary genetics analysis across computing platforms. Mol. Biol. Evol. 35:1547-1549. DOI |
16 | Nicholson, P., Jenkinson, P., Rezanoor, H. N. and Parry, D. W. 1993. Restriction fragment length polymorphism analysis of variation in Fusarium species causing ear blight of cereals. Plant Pathol. 42:905-914. DOI |
17 | Suga, H., Karugia, G. W., Ward, T., Gale, L. R., Tomimura, K., Nakajima, T., Miyasaka, A., Koizumi, S., Kageyama, K. and Hyakumachi, M. 2008. Molecular characterization of the Fusarium graminearum species complex in Japan. Phytopathology 98:159-166. DOI |
18 | Viaud, M., Pasquier, A. and Brygoo, Y. 2000. Diversity of soil fungi studied by PCR-RFLP of ITS. Mycol. Res. 104:1027-1032. DOI |
19 | Ye, J., Coulouris, G., Zaretskaya, I., Cutcutache, I., Rozen, S. and Madden, T. L. 2012. Primer-BLAST: a tool to design target-specific primers for polymerase chain reaction. BMC Bioinformatics 13:134. DOI |