Comparison of Bacterial Community of Healthy and Erwinia amylovora Infected Apples |
Kim, Su-Hyeon
(Division of Applied Life Science (BK21Plus) and Research Institute of Life Science, Gyeongsang National University)
Cho, Gyoengjun (Division of Applied Life Science (BK21Plus) and Research Institute of Life Science, Gyeongsang National University) Lee, Su In (Department of Plant Medicine, Institute of Agriculture & Life Science, Gyeongsang National University) Kim, Da-Ran (Division of Applied Life Science (BK21Plus) and Research Institute of Life Science, Gyeongsang National University) Kwak, Youn-Sig (Department of Plant Medicine, Institute of Agriculture & Life Science, Gyeongsang National University) |
1 | Yao, H., Sun, X., He, C., Maitra, P., Li, X.-C. and Guo, L.-D. 2019. Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem. Microbiome 7:57. DOI |
2 | Zheng, P.-F., Yang, Y.-Y., Zhang, S., You, C.-X., Zhang, Z.-L. and Hao, Y.-J. 2020. Identification and functional characterization of MdPIF3 in response to cold and drought stress in Malus domestica. Plant Cell Tissue Organ Cult. 144:435-447. |
3 | Ait Bahadou, S., Ouijja, A., Karfach, A., Tahiri, A. and Lahlali, R. 2018. New potential bacterial antagonists for the biocontrol of fire blight disease (Erwinia amylovora) in Morocco. Microb. Pathog. 117:7-15. DOI |
4 | Williamson, S. J. and Yooseph, S. 2012. From bacterial to microbial ecosystems (metagenomics). Methods Mol. Biol. 804:35-55. DOI |
5 | Buban, T. and Orosz-Kovacs, Z. 2003. The nectary as the primary site of infection by Erwinia amylovora (Burr.) Winslow et al.: a mini review. Plant Syst. Evol. 238:183-194. DOI |
6 | Born, Y., Fieseler, L., Thony, V., Leimer, N., Duffy, B. and Loessner, M. J. 2017. Engineering of bacteriophages Y2::dpoL1-C and Y2::luxAB for efficient control and rapid detection of the fire blight pathogen, Erwinia amylovora. Appl. Environ. Microbiol. 83:e00341-e00317. |
7 | Wassermann, B., Muller, H. and Berg, G. 2019. An apple a day: which bacteria do we eat with organic and conventional apples? Front. Microbiol. 10:1629. DOI |
8 | Vincent, P. J., Brunner, J. F., Grove, G. G., Petit, B., Tangren, G. V. and Jones, W. E. 2010. A web-based decision support system to enhance IPM programs in Washington tree fruit. Pest Manag. Sci. 66:587-595. DOI |
9 | Bengtsson-Palme, J., Kristiansson, E. and Larsson, D. G. J. 2018. Environmental factors influencing the development and spread of antibiotic resistance. FEMS Microbiol. Rev. 42:fux053. |
10 | Broggini, G. A. L., Duffy, B., Holliger, E., Scharer, H.-J., Gessler, C. and Patocchi, A. 2005. Detection of the fire blight biocontrol agent Bacillus subtilis BD170 (Biopro®) in a Swiss apple orchard. Eur. J. Plant Pathol. 111:93-100. DOI |
11 | Cabrefiga, J., Bonaterra, A. and Montesinos, E. 2007. Mechanisms of antagonism of Pseudomonas fluorescens EPS62e against Erwinia amylovora, the causal agent of fire blight. Int. Microbiol. 10:123-132. |
12 | Kim, M.-J., Chae, D.-H., Cho, G., Kim, D.-R. and Kwak, Y.-S. 2019b. Characterization of antibacterial strains against kiwifruit bacterial canker pathogen. Plant Pathol. J. 35:473-485. DOI |
13 | Zhao, Y.-Q., Tian, Y.-L., Wang, L.-M., Geng, G.-M., Zhao, W.-J., Hu, B.-S. and Zhao, Y.-F. 2019. Fire blight disease, a fastapproaching threat to apple and pear production in China. J. Integr. Agric. 18:815-820. DOI |
14 | Callahan, B. J., McMurdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A. and Holmes, S. P. 2016. DADA2: High-resolution sample inference from Illumina amplicon data. Nat. Methods. 13:581-583. DOI |
15 | Cui, Z., Huntley, R. B., Zeng, Q. and Steven, B. 2021. Temporal and spatial dynamics in the apple flower microbiome in the presence of the phytopathogen Erwinia amylovora. ISME J. 15:318-329. DOI |
16 | Kim, D.-R., Cho, G., Jeon, C.-W., Weller, D. M., Thomashow, L. S., Paulitz, T. C. and Kwak, Y.-S. 2019a. A mutualistic interaction between Streptomyces bacteria, strawberry plants and pollinating bees. Nat. Commun. 10:4802. DOI |
17 | Koczan, J. M., McGrath, M. J., Zhao, Y. and Sundin, G. W. 2009. Contribution of Erwinia amylovora exopolysaccharides amylovoran and levan to biofilm formation: implications in pathogenicity. Phytopathology 99:1237-1244. DOI |
18 | Murali, A., Bhargava, A. and Wright, E. S. 2018. IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences. Microbiome 6:140. DOI |
19 | Miller, T. D. and Schroth, M. N. 1972. Monitoring the epiphytic population of Erwinia amylovora on pear with a selective medium. Phytopathology 62:1175-1182. DOI |
20 | Lundberg, D. S., Yourstone, S., Mieczkowski, P., Jones, C. D. and Dangl, J. L. 2013. Practical innovations for high-throughput amplicon sequencing. Nat. Methods 10:999-1002. DOI |
21 | Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J. and Glockner, F. O. 2013. The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res. 41:D590-D596. DOI |
22 | Ritchie, H. and Roser, M. 2020. Agriculture production. Published online at OurWorldindata.org. URL https://ourworldindata.org/agricultural-production [19 July 2021]. |
23 | Kube, M., Migdoll, A. M., Gehring, I., Heitmann, K., Mayer, Y., Kuhl, H., Knaust, F., Geider, K. and Reinhardt, R. 2010. Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae. BMC Genomics 11:393. DOI |
24 | McManus, P. S., Stockwell, V. O., Sundin, G. W. and Jones, A. L. 2002. Antibiotic use in plant agriculture. Annu. Rev. Phytopathol. 40:443-465. DOI |
25 | Acimovic, S. G., Zeng, Q., McGhee, G. C., Sundin, G. W. and Wise, J. C. 2015. Control of fire blight (Erwinia amylovora) on apple trees with trunk-injected plant resistance inducers and antibiotics and assessment of induction of pathogenesisrelated protein genes. Front. Plant Sci. 6:16. DOI |
26 | Bogs, J. and Geider, K. 2000. Molecular analysis of sucrose metabolism of Erwinia amylovora and influence on bacterial virulence. J. Bacteriol. 182:5351-5358. DOI |
27 | Kruskal, W. H. and Wallis, W. A. 1952. Use of ranks in onecriterion variance analysis. J. Am. Stat. Assoc. 47:583-621. DOI |
28 | Rosello, G., Bonaterra, A., Frances, J., Montesinos, L., Badosa, E. and Montesinos, E. 2013. Biological control of fire blight of apple and pear with antagonistic Lactobacillus plantarum. Eur. J. Plant Pathol. 137:621-633. DOI |
29 | Pusey, P. L., Stockwell, V. O., Reardon, C. L., Smits, T. H. M. and Duffy, B. 2011. Antibiosis activity of Pantoea agglomerans biocontrol strain E325 against Erwinia amylovora on apple flower stigmas. Phytopathology 101:1234-1241. DOI |
30 | van der Zwet, T., Orolaza-Halbrendt, N. and Zeller, W. 2012. Fire blight: history, biology, and management. American Phytopathological Society, St. Paul, MN, USA. 421 pp. |
31 | Sholberg, P., Bedford, K. E., Haag, P. and Randall, P. 2001. Survey of Erwinia amylovora isolates from British Columbia for resistance to bactericides and virulence on apple. Can. J. Plant Pathol. 23:60-67. DOI |