Present Status and Future Management Strategies for Sugarcane Yellow Leaf Virus: A Major Constraint to the Global Sugarcane Production |
Holkar, Somnath Kadappa
(ICAR-Indian Institute of Sugarcane Research, Biological Control Centre)
Balasubramaniam, Parameswari (ICAR-Sugarcane Breeding Institute, Regional Centre) Kumar, Atul (ICAR-Indian Institute of Sugarcane Research, Biological Control Centre) Kadirvel, Nithya (Division of Crop Protection, ICAR-Sugarcane Breeding Institute) Shingote, Prashant Raghunath (Vasantrao Naik College of Agricultural Biotechnology (Dr. PDKV, Akola)) Chhabra, Manohar Lal (ICAR-Sugarcane Breeding Institute, Regional Centre) Kumar, Shubham (ICAR-Sugarcane Breeding Institute, Regional Centre) Kumar, Praveen (ICAR-Sugarcane Breeding Institute, Regional Centre) Viswanathan, Rasappa (Division of Crop Protection, ICAR-Sugarcane Breeding Institute) Jain, Rakesh Kumar (Division of Plant Pathology, ICAR-Indian Agricultural Research Institute, Pusa Campus) Pathak, Ashwini Dutt (ICAR-Indian Institute of Sugarcane Research) |
1 | Izquierdo, P., Gutierrez, A., Victoria, J. I., Angel, J. C., Avellaneda, M. C. and Lopez, J. 2013. Molecular markers associated with resistance to Sugarcane yellow leaf virus. In: Proceedings of the XXVIIIth Congress, pp. 1179-1188. International Society of Sugar Cane Technologists, Sao Paulo, Brazil. |
2 | King, A. M., Lefkowitz, E., Adams, M. J. and Carstens, E. B. 2011. Virus taxonomy: ninth report of the International Committee on Taxonomy of Viruses. Vol. 9. Elsevier, San Diego, CA, USA. 1327 pp. |
3 | Komor, E. 2011. Susceptibility of sugarcane, plantation weeds and grain cereals to infection by Sugarcane yellow leaf virus and selection by sugarcane breeding in Hawaii. Eur. J. Plant Pathol. 129:379-388. DOI |
4 | Kondrashov, A. S. 1988. Deleterious mutations and the evolution of sexual reproduction. Nature 336:435-440. DOI |
5 | Korimbocus, J., Coates, D., Barker, I. and Boonham, N. 2002. Improved detection of Sugarcane yellow leaf virus using a real-time fluorescent (TaqMan) RT-PCR assay. J. Virol. Methods 103:109-120. DOI |
6 | Kumar, S., Holkar, S. K. and Khan, M. S. 2017. Micropropagation technique for development of disease-free and genetically uniform seed cane. Indian Farm. 67:37-40. |
7 | Kumar, A., Holkar, S. K. and Singh, R. 2020. Screening of sugarcane genotypes against yellow leaf disease in tropical and sub-tropical conditions in India. In: 7th International Conference on Phytopathology in Cchieving UN Sustainable Development Goals, p. 307. ICAR-Indian Agricultural Research Institute, New Delhi, India. |
8 | Lefkowitz, E. J., Dempsey, D. M., Hendrickson, R. C., Orton, R. J., Siddell, S. G. and Smith, D. B. 2018. Virus taxonomy: the database of the International Committee on Taxonomy of Viruses (ICTV). Nucleic Acids Res. 46:D708-D717. DOI |
9 | Saitou, N. and Nei, M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425. |
10 | Sanford, J. C. and Johnston, S. A. 1985. The concept of parasitederived resistance-deriving resistance genes from the parasite's own genome. J. Theor. Biol. 113:395-405. DOI |
11 | Satyagopal, K., Sushil, S. N., Jeyakumar, P., Shankar, G., Sharma, O. P., Boina, D., Sain, S. K., Chattopadhyay, D., Asre, R., Kapoor, K. S., Arya, S., Kumar, S., Patni, C. S., Chattopadhyay, C., Pandey, A., Pachori, R., Thakare, A. Y., Basavanagoud, K., Halepyati, A. S., Patil, M. B. and Sreenivas, A. G. 2014. AESA based IPM package for Mustard. National Institute of Plant Health Management, Hyderabad, India. 49 pp. |
12 | Scagliusi, S. M. and Lockhart, B. E. L. 2000. Transmission, characterization, and serology of a Luteovirus associated with yellow leaf syndrome of sugarcane. Phytopathology 90:120-124. DOI |
13 | Schenck, S. 1990. Yellow leaf syndrome: a new sugarcane disease. Hawaiian Sugar Planters Association, Honolulu, HI, USA. 98 pp. |
14 | Schenck, S., Hu, J. S. and Lockhart, B. E. L. 1997. Use of a tissue blot immunoassay to determine the distribution of Sugarcane yellow leaf virus in Hawaii. Sugar Cane 4:5-8. |
15 | Zhu, Y. J., Lim, S. T. S., Schenck, S., Arcinas, A. and Komor, E. 2010. RT-PCR and quantitative real-time RT-PCR detection of Sugarcane yellow leaf virus (SCYLV) in symptomatic and asymptomatic plants of Hawaiian sugarcane cultivars and the relation of SCYLV to yield. Eur. J. Plant Pathol. 127:263-273. DOI |
16 | You, Q., Yang, X., Peng, Z., Islam, M. S., Sood, S., Luo, Z., Comstock, J., Xu, L. and Wang, J. 2019. Development of an Axiom Sugarcane100K SNP array for genetic map construction and QTL identification. Theor. Appl. Genet. 132:2829-2845. DOI |
17 | Zhang, Y.-L., Xiong, G.-R., Wang, J.-H., Zhang, S.-Z., Guan, M.- H., Yang, W.-J. and Liu, Z.-X. 2011. Construction of ihpRNA expression vector of Sugarcane yellow leaf virus CP protein gene and genetic transformation in tabacco. Bull. Bot. Res. 31:537-542. |
18 | Zhou, G., Li, J., Xu, D., Shen, W. and Deng, H. 2006. Occurrence of Sugarcane yellow leaf virus in South China and its transmission by the sugarcane-colonising aphid, Ceratovacuna Lanigera. Sci. Agric. Sin. 39:2023-2027. DOI |
19 | Singh, D., Tewari, A. K., Rao, G. P., Karuppaiah, R., Viswanathan, R., Arya, M. and Baranwal, V. K. 2009. RT-PCR/PCR analysis detected mixed infection of DNA and RNA viruses infecting sugarcane crops in different states of India: its phylogenetic relationships to closely related phytoplasmas. Sugar Tech 11:373-380. DOI |
20 | Schenck, S. and Lehrer, A. T. 2000. Factors affecting the transmission and spread of Sugarcane yellow leaf virus. Plant Dis. 84:1085-1088. DOI |
21 | Gilbert, R. A., Glynn, N. C., Comstock, J. C. and Davis, M. J. 2009. Agronomic performance and genetic characterization of sugarcane transformed for resistance to Sugarcane yellow leaf virus. Field Crops Res. 111:39-46. DOI |
22 | Chinnaraja, C., Viswanathan, R., Sathyabhama, M., Parameswari, B., Bagyalakshmi, K., Malathi, P. and Neelamathi, D. 2014. Quantification of Sugarcane yellow leaf virus in in vitro plantlets and asymptomatic plants of sugarcane by RT-qPCR. Curr. Sci. 106:729-734. |
23 | Chomic, A., Pearson, M. N., Clover, G. R. G., Farreyrol, K., Saul, D., Hampton, J. G. and Armstrong, K. F. 2010. A generic RTPCR assay for the detection of Luteoviridae. Plant Pathol. 59:429-442. DOI |
24 | Gao, S.-J., Lin, Y.-H., Pan, Y.-B., Damaj, M. B., Wang, Q.-N., Mirkov, T. E. and Chen, R.-K. 2012. Molecular characterization and phylogenetic analysis of Sugarcane yellow leaf virus isolates from China. Virus Genes 45:340-349. DOI |
25 | Garret, A., Kerlan, C. and Thomas, D. 1996. Ultrastructural study of acquisition and retention of Potato leafroll luteovirus in the alimentary canal of its aphid vector, Myzus persicae Sulz. Arch. Virol. 141:1279-1292. DOI |
26 | Giedroc, D. P. and Cornish, P. V. 2009. Frameshifting RNA pseudoknots: structure and mechanism. Virus Res. 139:193-208. DOI |
27 | Gildow, F. E. 1993. Evidence for receptor-mediated endocytosis regulating luteovirus acquisition by aphids. Phytopathology 83:270-277. DOI |
28 | Lehrer, A. T., Schenck, S., Yan, S.-L. and Komor, E. 2007. Movement of aphid-transmitted Sugarcane yellow leaf virus (ScYLV) within and between sugarcane plants. Plant Pathol. 56:711-717. DOI |
29 | Lehrer, A. T. and Komor, E. 2008. Symptom expression of yellow leaf disease in sugarcane cultivars with different degrees of infection by Sugarcane yellow leaf virus. Plant Pathol. 57:178-189. DOI |
30 | Lehrer, A. T. Kusalwong, A. and Komor, E. 2008. High incidence of Sugarcane yellow leaf virus (SCYLV) in sugar plantations and germplasm collections in Thailand. Aust. Plant Dis. Notes 3:89-92. DOI |
31 | Lehrer, A. T., Wu, K. K. and Komor, E. 2009. Impact of Sugarcane yellow leaf virus on growth and sugar yield of sugarcane. J. Gen. Plant Pathol. 75:288-296. DOI |
32 | Lin, Y.-H., Gao, S.-J., Damaj, M. B., Fu, H.-Y., Chen, R.-K. and Mirkov, T. E. 2014. Genome characterization of Sugarcane yellow leaf virus from China reveals a novel recombinant genotype. Arch. Virol. 159:1421-1429. DOI |
33 | Lockhart, B. E. L. and Cronje, C. P. R. 2000. Yellow leaf syndrome. In: A guide to sugarcane diseases, eds. by P. Rott, R. A. Bailey, J. C. Comstock, B. J. Croft and A. S. Saumtally, pp. 291-295. CIRAD-ISSCT, Montpellier, France. |
34 | Lockhart, B. E. L., Irey, M. J. and Comstock, J. C. 1996. Sugarcane bacilliform virus, Sugarcane mild mosaic virus and Sugarcane yellow leaf syndrome. In: Sugarcane germplasm con- servation and exchange, eds. by B. J. Croft, C. M. Piggin, E. S. Wallis, and D. M. Hogarth, pp. 108-112. Australian Centre for International Agricultural Research, Canberra, Australia. |
35 | Madugula, S. and Gali, U. D. 2017. Virus indexing for Sugarcane yellow leaf virus (SCYLV) in field varieties and in vitro regenerated plantlets of sugarcane. Aust. Plant Pathol. 46:433-439. DOI |
36 | Tacke, E., Prufer, D., Salamini, F. and Rohde, W. 1990. Characterization of a potato leafroll luteovirus subgenomic RNA: differential expression by internal translation initiation and UAG suppression. J. Gen. Virol. 71:2265-2272. DOI |
37 | Singh, J. and Singh, R. 2015. Sugarcane seed production: Indian scenario. J. Biotechnol. Crop Sci. 4:43-55. |
38 | Smith, G. R., Borg, Z., Lockhart, B. E. L., Braithwaite, K. S. and Gibbs, M. J. 2000. Sugarcane yellow leaf virus: a novel member of the Luteoviridae that probably arose by inter-species recombination. J. Gen. Virol. 81:1865-1869. DOI |
39 | Spall, V. E., Shanks, M. and Lomonossoff, G. P. 1997. Polyprotein processing as a strategy for gene expression in RNA viruses. Semin. Virol. 8:15-23. DOI |
40 | Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725-2729. DOI |
41 | Vega, J., Scagliusi, S. M. M. and Ulian, E. C. 1997. Sugarcane yellow leaf disease in Brazil: evidence for association with a Luteovirus. Plant Dis. 81:21-26. DOI |
42 | Victoria, J. I., Avellaneda, M. C., Angel, J. C. and Guzman, M. L. 2005. Resistance to Sugarcane yellow leaf virus in Colombia. Proc. Int. Soc. Sugar Cane Technol. 25:664-669. |
43 | Viswanathan, R. 2002. Sugarcane yellow leaf syndrome in India: incidence and effect on yield parameters. Sugar Cane Int. 5:17-23. |
44 | Comstock, J. C. and Miller, J. D. 2004. Yield comparisons: disease-free tissue culture versus bud-propagated sugarcane plants and healthy versus yellow leaf infected plants. J. Am. Soc. Sugar Cane Technol. 24:31-40. |
45 | Comstock, J. C., Irey, M. S., Lockhart, B. E. L. and Wang, Z. K. 1998. Incidence of yellow leaf syndrome in CP cultivars based on polymerase chain reaction and serological techniques. Sugar Cane 4:21-24. |
46 | Comstock, J. C., Irvine, J. E. and Miller, J. D. 1994. Yellow leaf syndrome appears on the United States mainland. Sugar J. 56:33-35. |
47 | Comstock, J. C. and Miller, J. D. 2003. Incidence and spread of Sugarcane yellow leaf virus in sugarcane clones in the CP cultivar development program at canal point. J. Am. Soc. Sugarcane Technol. 23:71-78. |
48 | Comstock, J. C., Miller, J. D. and Schnell, R. J. 2001. Incidence of Sugarcane yellow leaf virus in clones maintained in the world collection of sugarcane and related grasses at the United States National Repository in Miami, Florida. Sugar Tech 3:128-133. DOI |
49 | Comstock, J. C., Miller, J. D., Tai, P. Y. P. and Follis, J. E. 1999. Incidence of and resistance to Sugarcane yellow leaf virus in Florida. Proc. Int. Soc. Sugar Cane Technol. 23:366-372. |
50 | Costet, L., Raboin, L.-M., Payet, M., D'Hont, A. and Nibouche, S. 2012. A major quantitative trait allele for resistance to the Sugarcane yellow leaf virus (Luteoviridae). Plant Breed. 131:637-640. DOI |
51 | Zhu, Y. J., McCafferty, H., Osterman, G., Lim, S., Agbayani, R., Lehrer, A., Schenck, S. and Komor, E. 2011. Genetic transformation with untranslatable coat protein gene of Sugarcane yellow leaf virus reduces virus titter in sugarcane. Transgenic Res. 20:503-512. DOI |
52 | Goncalves, M. C., Vega, J., Oliveira, J. G. and Gomes, M. M. A. 2005. Sugarcane yellow leaf virus infection leads to alterations in photosynthetic efficiency and carbohydrate accumulation in sugarcane leaves. Fitopatol. Bras. 30:10-16. DOI |
53 | Glynn, N. C., Comstock, J. C., Sood, S. G., Dang, P. M. and Chaparro, J. X. 2008. Isolation of nucleotide binding siteleucine rich repeat and kinase resistance gene analogues from sugarcane (Saccharum spp.). Pest Manag. Sci. 64:48-56. DOI |
54 | Goncalves, M. C., Klerks, M. M., Verbeek, M., Vega, J. and van den Heuvel, J. F. J. M. 2002. The use of molecular beacons combined with NASBA for the sensitive detection of Sugarcane yellow leaf virus. Eur. J. Plant Pathol. 108:401-407. DOI |
55 | Goncalves, M. C., Pinto, L. R., Souza, S. C. and Landell, M. G. A. 2012. Virus diseases of sugarcane: a constant challenge to sugarcane breeding in Brazil. Funct. Plant Sci. Biotechnol. 6:108-116. |
56 | Madugula, S., Gali, U., Nalabolu, R. K. and Merugu, T. 2020. Current status of yellow leaf disease (YLD) of sugarcane caused by Sugarcane yellow leaf virus (ScYLV) in the states of Andhra Pradesh and Telangana. Int. J. Bio-resour. Stress Manag. 11:73-81. DOI |
57 | Zuckerkandl, E. and Pauling, L. 1965. Evolutionary divergence and convergence in proteins. In: Evolving genes and proteins, eds. by V. Bryson and H. J. Vogel, pp. 97-166. Elsevier Aca-demic Press, New York, NY, USA. |
58 | Chinnaraja, C., Viswanathan, R., Karuppaiah, R., Bagyalakshmi, K., Malathi, P. and Parameswari, B. 2013. Complete genome characterization of Sugarcane yellow leaf virus from India: evidence for RNA recombination. Eur. J. Plant Pathol. 135:335-349. DOI |
59 | Sharma, S. K., Meena, R. P., Pramesh, D., Kumar, S., Singh, T. S. and Baranwal, V. K. 2017. Nucleic-acid based techniques for the fine diagnosis of plant viruses in India. In: A century of plant virology in India, eds. by B. Mandal, G. P. Rao, V. K. Baranwal and R. K. Jain, pp. 621-686. Springer, Nature, Switzerland. |
60 | Madugula, S. and Gali, U. D. 2018. Detection of Sugarcane yellow leaf virus (SCYLV) causing yellow leaf disease (YLD) of sugarcane using serological and molecular tools. Int. Clin. Pathol. J. 6:58-62. |
61 | Maia, I. G., Gonçalaves, M. C., Arruda, P. and Vega, J. 2000. Molecular evidence that Sugarcane yellow leaf virus (ScYLV) is a member of the Luteoviridae family. Arch. Virol. 145:1009-1019. DOI |
62 | Mangwende, T., Ming, L.-W., Borth, W., Hu, J., Moore, P. H., Mirkov, T. E. and Albert, H. H. 2009. The P0 gene of Sugarcane yellow leaf virus encodes an RNA silencing suppressor with unique activities. Virology 384:38-50. DOI |
63 | Martin, D. P., Murrell, B., Golden, M., Khoosal, A. and Muhire, B. 2015. RDP4: detection and analysis of recombination patterns in virus genomes. Virus Evol. 1:vev003. |
64 | Mayo, M. A. and Miller, W. A. 1999. The structure and expression of Luteovirus genomes. In: The Luteoviridae, eds. by H. G. Smith and H. Barker, pp. 23-42. CABI Publishing, Wallingford, UK. |
65 | McAllister, C. D., Hoy, J. W. and Reagan, T. E. 2008. Temporal increase and spatial distribution of the sugarcane yellow leaf and infestations of the aphid vector, Melanaphis sacchari. Plant Dis. 92:607-615. DOI |
66 | Moonan, F. and Mirkov, T. E. 2002. Analyses of genotypic diversity among North, South, and Central American isolates of Sugarcane yellow leaf virus: evidence for Colombian origins and for intraspecific spatial phylogenetic variation. J. Virol. 76:1339-1348. DOI |
67 | Ahmad, Y. A., Royer, M. and Daugrois, J.-H. 2006b. Geographical distribution of four Sugarcane yellow leaf virus genotypes. Plant Dis. 90:1156-1560. DOI |
68 | Aaziz, R. and Tepfer, M. 1999. Recombination in RNA viruses and in virus-resistant transgenic plants. J. Gen. Virol. 80:1339-1346. DOI |
69 | Ahmad, Y. A., Costet, L., Daugrois, J.-H., Nibouche, S., Letourmy, P., Girard, J.-C. and Rott, P. 2007. Variation in infection capacity and in virulence exists between genotypes of Sugarcane yellow leaf virus. Plant Dis. 91:253-259. DOI |
70 | Ahmad, Y. A., Rassaby, L., Royer, M., Borg, Z., Braithwaite, K. S., Mirkov. T. E., Irey, M. S., Perrier, X., Smith, G. R. and Rott, P. 2006a. Yellow leaf of sugarcane is caused by at least three different genotypes of Sugarcane yellow leaf virus, one of which predominates on the Island of Reunion. Arch. Virol. 151:1355-1371. DOI |
71 | Aljanabi, S. M., Parmessur, Y., Moutia, Y., Saumtally, S. and Dookun, A. 2001. Further evidence of the association of a phytoplasma and a virus with yellow leaf syndrome in sugarcane. Plant Pathol. 50:628-636. DOI |
72 | Amata, R. L, Fernandez, E., Filloux, D., Martin, D. P., Rott, P. and Roumagnac, P. 2016. Prevalence of Sugarcane yellow leaf virus in sugarcane-producing regions in Kenya revealed by reverse-transcription loop-mediated isothermal amplification method. Plant Dis. 100:260-268. DOI |
73 | Anandakumar, L., Bagyalakshmi, K., Nithya, K., Parameswari, B. and Viswanathan, R. 2018. Reverse transcription loop-mediated isothermal amplification (RT-LAMP) assay for rapid diagnosis of Sugarcane yellow leaf virus in sugarcane. Sugar Tech 20:708-716. DOI |
74 | Arocha, Y., Gonzalez, L., Peralta, E. L. and Jones, P. 1999. First report of virus and phytoplasma pathogens associated with yellow leaf syndrome of sugarcane in Cuba. Plant Dis. 83:1177. |
75 | Guiderdoni, E. and Demarly, Y. 1988. Histology of somatic embryogenesis in cultured leaf segments of sugarcane plantlets. Plant Cell Tissue Org. Cult. 14:71-88. DOI |
76 | Gray, S., Cilia, M. and Ghanim, M. 2014. Circulative, "nonpropagative" virus transmission: an orchestra of virus-, insect-, and plant-derived instruments. Adv. Virus Res. 89:141-199. DOI |
77 | Grisham, M. P., Eggleston, G., Hoy, J. W. and Viator, R. P. 2009. The effect of Sugarcane yellow leaf virus infection on yield of sugarcane in Louisiana. Sugar Cane Int. 27:91-94. |
78 | Grisham, M. P., Pan, Y. B., Legendre, B. L., Godshall, M. A. and Eggleston, G. 2001. Effect of Sugarcane yellow leaf virus on sugarcane yield and juice quality. Proc. Int. Soc. Sugar Cane Technol. 24:434-438. |
79 | Viswanathan, R. and Balamuralikrishnan, M. 2004. Detection of Sugarcane yellow leaf virus, the causal agent of yellow leaf syndrome in sugarcane by DAS-ELISA. Arch. Phytopathol. Plant Prot. 37:169-176. DOI |
80 | Moonan, F., Molina, J. and Mirkov, T. E. 2000. Sugarcane yellow leaf virus: an emerging virus that has evolved by recombination between luteoviral and poleroviral ancestors. Virology 269:156-171. DOI |
81 | Viswanathan, R. and Balmuralikrishnan, M. 2005. Impact of mosaic infection on growth and yield of sugarcane. Sugar Tech 7:61-65. DOI |
82 | Viswanathan, R., Balamuralikrishnan, M. and Karuppaiah, R. 2006. Yellow leaf disease of sugarcane: occurrence and impact of infected setts on disease severity and yield. Proc. Sugar Cancer Technol. Assoc. India 67:74-89. |
83 | Viswanathan, R., Balamuralikrishnan, M. and Karuppaiah, R. 2008. Identification of three genotypes of Sugarcane yellow leaf virus causing yellow leaf disease from India and their molecular characterization. Virus Genes 37:368-379. DOI |
84 | Viswanathan, R., Chinnaraja, C., Malathi, P., Gomathi, R., Rakkiyappan, P., Neelamathi, D. and Ravichandran, V. 2014. Impact of Sugarcane yellow leaf virus (ScYLV) infection on physiological efficiency and growth parameters of sugarcane under tropical climatic conditions in India. Acta Physiol. Plant. 36:1805-1822. DOI |
85 | Viswanathan, R., Chinnaraja, C., Parameswari, B. and Chhabra, M. L. 2016. Status of yellow leaf resistance in sugarcane germplasm and parental clones at Sugarcane Breeding Institute, India. Int. Sugar J. 115:60-71. |
86 | Viswanathan, R., Jayanthi, R. and Sanakaranarayanan, C. 2017a. Integrated disease and pest management in sugarcane. Indian Farm. 67:28-32. |
87 | Viswanathan, R., Karuppaiah, R. and Balamuralikrishnan, M. 2010. Detection of three major RNA viruses infecting sugarcane by multiplex reverse transcription-polymerase chain reaction (multiplex-RT-PCR). Aust. Plant Pathol. 39:79-84. DOI |
88 | Debibakas, S., Rocher, S., Garsmeur, O., Toubi, L., Roques, D., D'Hont, A., Hoarau, J.-Y. and Daugrois, J. H. 2014. Prospecting sugarcane resistance to Sugarcane yellow leaf virus by genome-wide association. Theor. Appl. Genet. 127:1719-1732. DOI |
89 | Cronje, C. P. R., Tymon, A. M., Jones, P. and Bailey, R. A. 1998. Association of a phytoplasma with a yellow leaf syndrome of sugarcane in Africa. Ann. Appl. Biol. 133:177-186. DOI |
90 | D'Arey, C. J. D. and Domier, L. L. 2005. Luteoviridae. In: Virus Taxonomy: 8th Report of the International Committee on Taxonomy of Viruses, eds. by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger and L. A. Ball, pp. 891-900. Academic Press, New York, NY, USA. |
91 | DeBlasio, S. L., Chavez, J. D., Alexander, M. M., Ramsey, J., Eng, J. K., Mahoney, J., Gray, S. M., Bruce, J. E. and Cilia, M. 2016. Visualization of host-polerovirus interaction topologies using protein interaction reporter technology. J. Virol. 90:1973-1987. DOI |
92 | Dinesh-Kumar, S. P. and Miller, W. A. 1993. Control of start codon choice on a plant viral RNA encoding overlapping genes. Plant Cell 5:679-692. DOI |
93 | Edon-Jock, C., Rott, P., Vaillant, J., Fernandez, E., Girard, J.-C. and Daugrois, J.-H. 2007. Status of Sugarcane yellow leaf virus in commercial fields and risk assessment in Guadeloupe. Proc. Int. Soc. Sugar Cane Technol. 26:995-1004. |
94 | Elsayed, A. I., Boulila, M., Odero, D. C. and Komor, E. 2018. Phylogenetic and recombination analysis of sorghum isolates of Sugarcane yellow leaf virus. Plant Pathol. 67:221-232. DOI |
95 | ElSayed, A. I., Boulila, M. and Rott, P. 2014. Molecular evolutionary history of Sugarcane yellow leaf virus based on sequence analysis of RNA-dependent RNA polymerase and putative aphid transmission factor-coding genes. J. Mol. Evol. 78:349-365. DOI |
96 | Hodgetts, J., Tomlinson, J., Boonham, N., Gonzalez-Martin, I., Nikolic, P., Swarbrick, P., Yankey, E. N. and Dickinson, M. 2011. Development of rapid in-field loop-mediated isothermal amplification (LAMP) assays for phytoplasmas. Bull. Insectol. 64(Suppl):S41-S42. |
97 | Gutierrez, S., Michalakis, Y., Van Munster, M. and Blanc, S. 2013. Plant feeding by insect vectors can affect life cycle, population genetics and evolution of plant viruses. Funct. Ecol. 27:610-622. DOI |
98 | Hall, D. G. 1987. The sugarcane aphid, Melanaphis sacchari (Zehntner), in Florida. J. Am. Soc. Sugar Cane Technol. 7:26-29. |
99 | Hall, D. G. 1988. Insects and mites associated with sugarcane in Florida. Fla. Entomol. 71:138-150. DOI |
100 | Holkar, S. K., Gupta, H., Kumar, A., Baitha, A., Kumar, S. and Singh, J. 2016a. Diagnosis of yellow leaf disease of sugarcane from subtropical India. In: National Symposium on Ecofriendly Approaches for Plant Disease Management: Recent Trends and Opportunities, p. 177. ICAR-Indian Institute of Pulses Research, Kanpur, India. |
101 | Palaniswami, C., Viswanathan, R., Bhaskaran, A., Rakkiyappan, P. and Gopalasundaram, P. 2014. Mapping sugarcane yellow leaf disease affected area using remote sensing technique. J. Sugarcane Res. 4:55-61. |
102 | Viswanathan, R., Alexander, K. C. and Garg, I. D. 1996. Detection of Sugarcane bacilliform virus in sugarcane germplasm. Acta Virol. 40:5-8. |
103 | Moutia, J. F. Y. and Saumtally, S. 1999. Symptomology of yellow leaf syndrome and detection and distribution of Sugarcane yellow leaf virus in Mauritius. Proc. Int. Soc. Sugar Cane Technol. 23:355-364. |
104 | Nair, S., Manimekalai, R., Raj, P. G. and Hegde, V. 2016. Loop mediated isothermal amplification (LAMP) assay for detection of coconut root wilt disease and arecanut yellow leaf disease phytoplasma. World J. Microbiol. Biotechnol. 32:108. DOI |
105 | Nibouche, S., Costet, L., Holt, J. R., Jacobson, A., Pekarcik, A., Sadeyen, J., Armstrong, J. S., Peterson, G. C., McLaren, N. and Medina, R. F. 2018. Invasion of sorghum in the Americas by a new sugarcane aphid (Melanaphis sacchari) superclone. PLoS ONE 13:e0196124. DOI |
106 | Ohshima, K., Tomitaka, Y., Wood, J. T., Minematsu, Y., Kajiyama, H., Tomimura, K. and Gibbs, A. J. 2007. Pattern of recombination in Turnip mosaic virus genomic sequences indicates hotspots of recombination. J. Gen. Virol. 88:298-315. DOI |
107 | Parmessur, Y., Aljanabi, S., Saumtally, S. and Saumtally, A. D. 2002. Sugarcane yellow leaf virus and sugarcane yellows phytoplasma: elimination by tissue culture. Plant Pathol. 51:561-566. DOI |
108 | Bagyalakshmi, K., Parameswari, B., Chinnaraja, C., Karuppaiah, R., Kumar, V. G. and Viswanathan, R. 2012. Genetic variability and potential recombination events in the HC-Pro gene of sugarcane streak mosaic virus. Arch. Virol. 157:1371-1375. DOI |
109 | Pazhouhandeh, M., Dieterle, M., Marrocco, K., Lechner, E., Berry, B., Brault, V., Hemmer, O., Kretsch, T., Richards, K. E., Genschik, P. and Ziegler-Graff, V. 2006. F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function. Proc. Natl. Acad. Sci. U. S. A. 103:1994-1999. DOI |
110 | Peter, K. A., Liang, D., Palukaitis, P. and Gray, S. M. 2008. Small deletions in the Potato leafroll virus readthrough protein affect particle morphology, aphid transmission, virus movement and accumulation. J. Gen. Virol. 89:2037-2045. DOI |
111 | Bailey, R. A., Bechet, G. R. and Cronje, C. P. R. 1996. Notes on the occurrence of yellow leaf syndrome of sugarcane in southern Africa. Proc. S. Afr. Sugar Technol. Assoc. 70:3-6. |
112 | Balikai, R. A. 2004. Chemical control of sugarcane leaf aphid, Melanaphis sacchari (Zehntner) on rabi sorghum. Agric. Sci. Digest 24:142-144. |
113 | Baumberger, N., Tsai, C.-H., Lie, M., Havecker, E. and Baulcombe, D. C. 2007. The polerovirus silencing suppressor P0 targets ARGONAUTE proteins for degradation. Curr. Biol. 17:1609-1614. DOI |
114 | Behary Paray, N., Khoodoo, M. H. R., Saumtally, A. S. and Ganeshan, S. 2011. Vector-virus relationship for Melanaphis sacchari (Zehnt.) (Hemiptera: Aphididae) transmitting Sugarcane yellow leaf Luteovirus in Mauritius. Sugar Tech 13:77-80. DOI |
115 | Bertani, P. R., Perera, M. F., Arias, M. E., Luque, C., Funes, C., Gonzalez, V., Cuenya, M. I., Ploper, L. D., Welin, B. and Castagnaro, A. P. 2014. A study of the sugarcane yellow leaf disease in Argentina. Plant Dis. 98:1036-1042. DOI |
116 | Birchfield, W. 1984. Nematode parasites of sugarcane. In: Plant and insect nematodes, ed. by W. R. Nickel, pp. 571-589. Marcel Dekker, New York, NY, USA. |
117 | Viswanathan, R., Karuppaiah, R., Malathi, P., Kumar, V. G. and Chinnaraja, C. 2009. Diagnosis of Sugarcane yellow leaf virus in asymptomatic sugarcane by RT-PCR. Sugar Tech 11:368-372. DOI |
118 | Holkar, S. K., Kumar, A., Singh, N., Khan, M. S., Singh, R. K. and Kumar, S. 2016b. Testing and certification of tissue culture-raised quality planting material at accredited test laboratory, ICAR-IISR, Lucknow. In: National Conference on Challenges, Opportunities and Innovative Approaches in Sugarcane: Agriculture, Bio-energy and Climate Change, p. 177. Uttar Pradesh Council of Sugarcane Research, Shahajahanpur, India. |
119 | Borth, W., Hu, J. S. and Schenck, S. 1994. Double-stranded RNA associated with sugarcane yellow leaf syndrome. Sugar Cane 3:5-8. |
120 | Bouallegue, M., Mezghani-Khemakhem, M., Makni, H. and Makni, M. 2014. First report of Sugarcane yellow leaf virus infecting barley in Tunisia. Plant Dis. 98:1016. |
121 | Viswanathan, R., Malathi, P. and Neelamathi, D. 2018. Enhancing sugarcane yield per hectare through improved virus-free seed nursery programme. ICAR News 24:4-5. |
122 | Viswanathan, R., Nithya, K., Parameswari, B., Jeevalatha, A. and Rao, G. P. 2017b. The current status of Luteovirus and Polerovirus research in India. In: A century of plant virology in India, eds. by B. Mandal, G. P. Rao, V. K. Baranwal and R. K. Jain, pp. 285-305. Springer, Nature, Switzerland. |
123 | Viswanathan, R., Padmanaban, P., Mohanraj, D., Sundar, A. R. and Premachandran, M. N. 1999. Suspected yellow leaf syndrome in sugarcane. Sugarcane Breed. Inst. Newsl. 18:2-3. |
124 | Viswanathan, R. and Rao, G. P. 2011. Disease scenario and management of major sugarcane diseases in India. Sugar Tech 13:336-353. DOI |
125 | Wang, M. Q., Xu, D. L., Li, R. and Zhou, G. H. 2012. Genotype identification and genetic diversity of Sugarcane yellow leaf virus in China. Plant Pathol. 61:986-993. DOI |
126 | Wang, M.-Q. and Zhou, G.-H. 2010. A near-complete genome sequence of a distinct isolate of Sugarcane yellow leaf virus from China, representing a sixth new genotype. Virus Genes 41:268-272. DOI |
127 | Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-91. DOI |
128 | ElSayed, A. I., Komor, E., Boulila, M., Viswanathan, R. and Odero, D. C. 2015. Biology and management of Sugarcane yellow leaf virus: an historical overview. Arch. Virol. 160:2921-2934. DOI |
129 | ElSayed, A. I., Weig, A. R. and Komor, E. 2011. Molecular characterization of Hawaiian Sugarcane yellow virus leaf genotypes and their phylogenetic relationship to strains from other sugarcane-growing countries. Eur. J. Plant Pathol. 129:399-412. DOI |
130 | Espinoza-Delgado, H. V., Kaye, C., Hincapie, M., Boukari, W., Wei, C., Fernandez, J. V., Mollov, D., Comstock, J. C. and Rott, P. 2016. First report of Sugarcane yellow leaf virus infecting Columbus grass (Sorghum almum) in Florida. Plant Dis. 100:1027. |
131 | Filloux, D., Fernandez, E., Comstock, J. C., Mollov, D., Roumagnac, P. and Rott, P. 2018. Viral metagenomic-based screening of sugarcane from Florida reveals occurrence of six sugarcane-infecting viruses and high prevalence of Sugarcane yellow leaf virus. Plant Dis. 102:2317-2323. DOI |
132 | Fitch, M. M. M., Lehrer, A. T., Komor, E. and Moore, P. H. 2001. Elimination of Sugarcane yellow leaf virus from infected sugarcane plants by meristem tip culture visualized by tissue blot immunoassay. Plant Pathol. 50:676-680. DOI |
133 | Flynn, J., Powell, G., Perdomo, R., Monres, G., Quebedeaux, K. and Comstock, J. C. 2005. Comparison of sugarcane disease incidence and yield of field-run, heat-treated, and tissue culture based seed cane. J. Am. Soc. Sugar Cane Technol. 25:88-100. |
134 | Francki, R. I. B., Milne, R. G. and Hatta, T. 1985. Atlas of plant viruses, Vol. 1. CRC Press, Boca Raton, FL, USA. 238 pp. |
135 | Irey, M. S., Baucum, L. E., Derrick, K. S., Manjunath, K. L. and Lockhart, B. E. 1997. Detection of the luteovirus associated with yellow leaf syndrome of sugarcane (YLS) by a reverse transcriptase polymerase chain reaction and incidence of YLS in commercial varieties in Florida. In: 5th ISSCT Pathology and 2nd ISSCT Molecular Biology Combined Workshop. Umhlanga Rocks, South Africa. |
136 | Holkar, S. K., Lal, R., Kumar, S., Pandey, D. K., Singh, P. K. and Kumar, A. 2015. Occurrence of yellow leaf disease (YLD) on sugarcane genotypes for North-West region of subtropical India. In: National Symposium-cum Mid-eastern Zone Meeting of IPS on Impact of Climate Change on Plant-microbe Interactions and Its Implications, pp. 57-58. Banaras Hindu University, Varanasi, India. |
137 | Hull, R. 2002. Matthews plant virology. 4th ed. Elsevier Academic Press, San Diego, CA, USA. 1056 pp. |
138 | Ingelbrecht, I. L., Irvine, J. E. and Mirkov, T. E. 1999. Posttranscriptional gene silencing in transgenic sugarcane: dissection of homology-dependent virus resistance in a monocot that has a complex polyploid genome. Plant Physiol. 119:1187-1198. DOI |
139 | Islam, M. S., Yang, X., Sood, S., Comstock, J. C. and Wang, J. 2018. Molecular characterization of genetic basis of Sugarcane yellow leaf virus (SCYLV) resistance in Saccharum spp. hybrid. Plant Breed. 137:598-604. DOI |
140 | Izaguirre-Mayoral, M. L., Carballo, O., Alceste, C., Romano, M. and Nass, H. A. 2002. Physiological performance of asymptomatic and yellow leaf syndrome-affected sugarcanes in Venezuela. J. Phytopathol. 150:13-19. DOI |
141 | Rassaby, L., Girard, J.-C., Lemaire, O., Costet, L., Irey, M. S., Kodja, H., Lockhart, B. E. L. and Rott, P. 2004. Spread of Sugarcane yellow leaf virus in sugarcane plants and fields on the island of Reunion. Plant Pathol. 53:117-125. DOI |
142 | Pinheiro, P. V., Kliot, A., Ghanim, M. and Cilia, M. 2015. Is there a role for symbiotic bacteria in plant virus transmission by insects? Curr. Opin. Insect Sci. 8:69-78. DOI |
143 | Rao, G. P., Gaur, R. K., Singh, M., Srivastava, A. K., Virk, A. S., Singh, N., Viswanathan, R., Patil, A. S. and Jain, R. K. 2000. Occurrence of Sugarcane yellow leaf virus in India. Sugar Tech 2:37-38. DOI |
144 | Rao, G. P., Gaur, R. K., Singh, M., Viswanathan, R., Chandrasena, G. and Dharamwardhaanhe, N. M. W. N. 2001. Occurrence of Sugarcane yellow leaf virus in India and Sri Lanka. Proc. Int. Soc. Sugar Cane Technol. 24:469-470. |
145 | Rassaby, L., Girard, J.-C., Letourmy, P., Chaume, J., Irey, M. S., Lockhart, B. E. L., Kodja, H. and Rott, P. 2003. Impact of Sugarcane yellow leaf virus on sugarcane yield and juice quality in Reunion Island. Eur. J. Plant Pathol. 109:459-466. DOI |
146 | Ricaud, C. 1968. Yellow wilt of sugarcane in eastern Africa. Sugarcane Pathol. Newsl. 1:45-49. |
147 | Wei, C., Hincapie, M., Larsen, N., Nuessly, G. and Rott, P. 2016. First report of Sugarcane yellow leaf virus infecting grain sorghum (Sorghum bicolor) in the United States. Plant Dis. 100:1798. DOI |
148 | White, W. H., Reagan, T. E. and Hall, D. G. 2001. Melanaphis sacchari (Homoptera: Aphididae), a sugarcane pest new to Louisiana. Fla. Entomol. 84:435. DOI |
149 | Xie, Y., Wang. M., Xu, D., Li, R. and Zhou, G. 2009. Simultaneous detection and identification of four sugarcane viruses by one step RT-PCR. J. Virol. Methods 162:64-68. DOI |
150 | Reinbold, C., Lacombe, S., Ziegler-Graff, V., Scheidecker, D., Wiss, L., Beuve, M., Caranta, C. and Brault, V. 2013. Closely related poleroviruses depend on distinct translation initiation factors to infect Arabidopsis thaliana. Mol. Plant-Microbe Interact. 26:257-265. DOI |
151 | Ricaud, C., Egan, B. T., Gillaspie, A. G. and Hughes, C. G. 2012. Diseases of sugarcane: major diseases. Elsevier, Amsterdam, The Netherlands. 412 pp. |
152 | Rochow, W. F. 1982. Dependent transmission by aphids of Barley yellow dwarf luteoviruses from mixed infections. Phytopathology 72:302-305. |
153 | Braithwaite, K. S., Egeskov, N. M. and Smith, G. R. 1995. Detection of Sugarcane bacilliform virus using the polymerase chain reaction. Plant Dis. 79:792-796. DOI |
154 | Boukari, W., Kaye, C., Wei, C., Hincapie, M., LaBorde, C., Irey, M. and Rott, P. 2019. Field infection of virus-free sugarcane by Sugarcane yellow leaf virus and effect of yellow leaf on sugarcane grown on organic and on mineral soils in Florida. Plant Dis. 103:2367-2373. DOI |
155 | Boukari, W., Wei, C., Tang, L., Hincapie, M., Naranjo, M., Nuessly, G., Beuzelin, J., Sood, S. and Rott, P. 2020. Lack of transmission of Sugarcane yellow leaf virus in Florida from Columbus grass and sugarcane to sugarcane with aphids or mites. PLoS ONE 15:e0230066. DOI |
156 | Bragard, C., Caciagli, P., Lemaire, O., Lopez-Moya, J. J., MacFarlane, S., Peters, D., Susi, P. and Torrance, L. 2013. Status and prospects of plant virus control through interference with vector transmission. Annu. Rev. Phytopathol. 51:177-201. DOI |
157 | Bruyere, A., Brault, V., Ziegler-Graff, V., Simonis, M. T., Van den Heuvel, J. F. J. M., Richards, K., Guilley, H., Jonard, G. and Herrbach, E. 1997. Effects of mutations in the Beet western yellows virus readthrough protein on its expression and packaging and on virus accumulation, symptoms, and aphid transmission. Virology 230:323-334. DOI |
158 | Rodriguez-Medina, C., Boissinot, S., Chapuis, S., Gereige, D., Rastegar, M., Erdinger, M., Revers, F., Ziegler-Graff, V. and Brault, V. 2015. A protein kinase binds the C-terminal domain of the readthrough protein of Turnip yellows virus and regulates virus accumulation. Virology 486:44-53. DOI |
159 | Rott, P., Bailey, R. A., Comstock, J. C., Croft, B. J. and Saumtally, S. 2000. D-CAS 1.2: a guide to sugarcane diseases. CIRADISSCT, CIRAD Publication Services, Montepellier, France. |
160 | Rott, P., Mirkov, T. E., Schenck, S. and Girard, J. C. 2008. Recent advances in research on Sugarcane yellow leaf virus, the causal agent of sugarcane yellow leaf. Sugar Cane Int. 26:18-27. |
161 | Chatenet, M., Delage, C., Ripolles, M., Irey, M., Lockhart, B. E. L. and Rott, P. 2001. Detection of Sugarcane yellow leaf virus in quarantine and production of virus-free sugarcane by apical meristem culture. Plant Dis. 85:1177-1180. DOI |
162 | Chinnaraja, C. and Viswanathan, R. 2015. Variability in yellow leaf symptom expression caused by the Sugarcane yellow leaf virus and its seasonal influence in sugarcane. Phytoparasitica 43:339-353. DOI |
163 | Chinnaraja, C. and Viswanathan, R. 2017. Sugarcane yellow leaf virus and its impact in sugarcane. Lambert Academic Publishing (LAP), Balti, Republic of Moldova. 288 pp. |
164 | Yan, S.-L., Lehrer, A. T., Hajirezaei, M. R., Springer, A. and Komor, E. 2009. Modulation of carbohydrate metabolism and chloroplast structure in sugarcane leaves which were infected by Sugarcane yellow leaf virus (SCYLV). Physiol. Mol. Plant Pathol. 73:78-87. DOI |
165 | Yang, X., Sood, S., Glynn, N., Islam, M. S., Comstock, J. and Wang, J. 2017. Constructing high-density genetic maps for polyploid sugarcane (Saccharum spp.) and identifying quantitative trait loci controlling brown rust resistance. Mol. Breed. 37:116. DOI |
166 | Yang, X., Sood, S., Luo, Z., Todd, J. and Wang, J. 2019. Genomewide association studies identified resistance loci to orange rust and yellow leaf virus diseases in sugarcane (Saccharum spp.). Phytopathology 109:623-631. DOI |
167 | Yang, Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24:1586-1591. DOI |
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