Loop-Mediated Isothermal Amplification for the Detection of Xanthomonas arboricola pv. pruni in Peaches |
Li, Weilan
(School of Applied Biosciences, Kyungpook National University)
Lee, Seung-Yeol (School of Applied Biosciences, Kyungpook National University) Back, Chang-Gi (Horticultural and Herbal Crop Environment Division, National Institute of Horticultural and Herbal Science) Ten, Leonid N. (School of Applied Biosciences, Kyungpook National University) Jung, Hee-Young (School of Applied Biosciences, Kyungpook National University) |
1 | Barionovi, D. and Scortichini, M. 2008. Integron variability in Xanthomonas arboricola pv. juglandis and Xanthomonas arboricola pv. pruni strains. FEMS Microbiol. Lett. 288:19-24. DOI |
2 | Buhlmann, A., Pothier, J. F., Tomlinson, J. A., Frey, J. E., Boonham, N., Smits, T. H. M. and Duffy, B. 2013. Genomicsinformed design of loop-mediated isothermal amplification for detection of phytopathogenic Xanthomonas arboricola pv. pruni at the intraspecific level. Plant Pathol. 62:475-484. DOI |
3 | Garita-Cambronero, J., Palacio-Bielsa, A., Lopez, M. M. and Cubero, J. 2017. Pan-genomic analysis permits differentiation of virulent and non-virulent strains of Xanthomonas arboricola that cohabit Prunus spp. and elucidate bacterial virulence factors. Front. Microbiol. 8:573. |
4 | Goodman, C. A. and Hattingh, M. J. 1986. Transmission of Xanthomonas campestris pv. pruni in plum and apricot nursery trees by budding. HortScience 21:995-996. |
5 | Hammerschlag, F. A. 2000. Resistant responses of peach somaclone 122-1 to Xanthomonas campestris pv. pruni and to Pseudomonas syringae pv. syringae. HortScience 35:141-143. DOI |
6 | Iwamoto, T., Sonobe, T. and Hayashi, K. 2003. Loop-mediated isothermal ampli-cation for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J. Clin. Microbiol. 41:2616-2622. DOI |
7 | Kawaguchi, A. 2014. Genetic diversity of Xanthomonas arboricola pv. pruni strains in Japan revealed by DNA fingerprinting. J. Gen. Plant Pathol. 80:366-369. DOI |
8 | Lane, D. J. 1991. 16S/23S rRNA sequencing. In: Nucleic acid techniques in bacterial systematics, eds. by E. Stackebrandt and M. Goodfellow, pp. 115-175. Wiley, New York, USA. |
9 | Lopez-Soriano, P., Noguera, P., Gorris, M. T., Puchades, R., Maquieira, A., Marco-Noales, E. and Lopez, M. M. 2017. Lateral flow immunoassay for on-site detection of Xanthomonas arboricola pv. pruni in symptomatic field samples. PLoS ONE 12:e0176201. DOI |
10 | Notomi, T., Okayama, H., Masubuchi, H., Yonekawa, T., Watanabe, K., Amino, N. and Hase, T. 2000. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28:E63. DOI |
11 | Pagani, M. C. 2005. An ABC transporter protein and molecular diagnosis of Xanthomonas arboricola pv. pruni causing bacterial spot of stone fruits. Ph.D. thesis. North Carolina State University, Raleigh, NC, USA. |
12 | Palacio-Bielsa, A., Cubero, J., Cambra, M. A., Collados, R., Berruete, I. M. and Lopez, M. M. 2011. Development of an efficient real-time quantitative PCR protocol for detection of Xanthomonas arboricola pv. pruni in Prunus species. Appl. Environ. Microbiol. 77:89-97. DOI |
13 | Palacio-Bielsa, A., Lopez-Soriano, P., Buhlmann, A., van Doorn, J., Pham, K., Cambra, M. A., Berruete, I. M., Pothier, J. F., Duffy, B., Olmos, A. and Lopez, M. M. 2015. Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples. J. Microbiol. Methods 112:36-39. DOI |
14 | Park, S. Y., Lee, Y. S., Koh, Y. J., Hur, J.-S. and Jung, J. S. 2010. Detection of Xanthomonas arboricola pv. pruni by PCR using primers based on DNA sequences related to the hrp genes. J. Microbiol. 48:554-558. DOI |
15 | Park, S. Y., Lee, Y. S., Shin, J. S., Koh, Y. J. and Jung, J. S. 2009. Genetic diversity of Xanthomonas arboricola pv. pruni isolated in Korea. J. Life Sci. 19:684-687. DOI |
16 | Tan, L., Rong, W., Lou, H., Chen, Y. and He, C. 2014. The Xanthomonas campestris effector protein XopDXcc8004 triggers plant disease tolerance by targeting DELLA proteins. New Phytol. 204:595-608. DOI |
17 | Pothier, J. F., Pagani, M. C., Pelludat, C., Ritchie, D. F. and Duffy, B. 2011. A duplex-PCR method for species- and pathovarlevel identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni. J. Microbiol. Methods 86:16-24. DOI |
18 | Ritchie, D. F. 1995. Bacterial spot. In: Compendium of stone fruit diseases, eds. by J. M. Ogawa, E. I. Zehr, G. W. Bird, D. F. Ritchie, K. Uriu and J. K. Uyemoto, pp. 50-52. APS Press, St. Paul, MN, USA. |
19 | Ritchie, D. F. 1999. Sprays for control of bacterial spot of peach cultivars having different levels of disease susceptibility, 1998. Fungic. Nematic. Tests 54:63-64. |
20 | Snaidr, J., Amann, R., Huber, I., Ludwig, W. and Schleifer, K. H. 1997. Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl. Environ. Microbiol. 63:2884-2896. DOI |
21 | Vauterin, L., Hoste, B., Kersters, K. and Swings, J. 1995. Reclassi-cation of Xanthomonas. Int. J. Syst. Evol. Bacteriol. 45:472-489. DOI |
22 | Yoon, S. H., Ha, S. M., Kwon, S., Lim, J., Kim, Y., Seo, H. and Chun, J. 2017. Introducing EzBioCloud: a taxonomically united database of 16S rRNA and whole genome assemblies. Int. J. Syst. Evol. Microbiol. 67:1613-1617. DOI |
23 | Zaccardelli, M., Malaguti, S. and Bazzi, C. 1998. Biological and epidemiological aspects of Xanthomonas arboricola pv. pruni on peach in Italy. J. Plant Pathol. 80:125-132. |
24 | Ballard, E. L., Dietzgen, R. G., Sly, L. I., Gouk, C., Horlock, C. and Fegan, M. 2011. Development of a Bio-PCR protocol for the detection of Xanthomonas arboricola pv. pruni. Plant Dis. 95:1109-1115. DOI |
25 | Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. and Struhl, K. 1992. Current protocols in molecular biology. Vol. I. Greene Publishing Associates and Wiley Interscience, New York, NY. |