Characterization of a Begomovirus-Betasatellite Complex, Producing Defective Molecules in Spinach (Spinacia oleracea L.), a New Host for Begomovirus and Betasatellite Complex in Pakistan |
Tahir, Muhammad Nouman
(Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering)
Hameed, Amir (Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering) Amin, Imran (Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering) Mansoor, Shahid (Agricultural Biotechnology Division, National Institute for Biotechnology and Genetic Engineering) |
1 | Mubin, M., Shahid, M. S., Tahir, M. N., Briddon R. W. and Mansoor, S. 2010. Characterization of begomovirus components from a weed suggests that begomoviruses may associate with multiple distinct DNA satellites. Virus Genes 40:452-457. DOI |
2 | Muhire, B. M., Varsani, A. and Martin, D. P. 2014. SDT: a virus classification tool based on pairwise sequence alignment and identity calculation. PLoS One 9:e108277. DOI |
3 | Patil, B. L. and Dasgupta, I. 2006. Defective interfering DNAs of plant viruses. CRC Crit. Rev. Plant Sci. 25:47-64. DOI |
4 | Saeed, M., Zafar, Y., Randles, J. W. and Rezaian, M. A. 2007. A monopartite begomovirus-associated satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection. J. Gen. Virol. 88:2881-2889. DOI |
5 | Sahu, A. K., Nehra, C., Marwal, A. and Gaur, R. K. 2015. First report of a begomovirus associated with betasatellites infecting spinach (Spinacia oleracea) in India. J. Gen. Plant Pathol. 81:146-150. DOI |
6 | Shahid, M. S., Mansoor, S. and Briddon, R. W. 2007. Complete nucleotide sequences of cotton leaf curl Rajasthan virus and its associated DNA beta molecule infecting tomato. Arch. Virol. 152:2131-2134. DOI |
7 | Stanley, J., Frischmuth, T. and Ellwood, S. 1990. Defective viral DNA ameliorates symptoms of geminivirus infection in transgenic plants. Proc. Natl. Acad. Sci. U.S.A. 87:6291-6295. DOI |
8 | Tamura, K., Stecher, G., Peterson, D., Filipski, A. and Kumar, S. 2013. MEGA6: Molecular evolutionary genetics analysis version 6.0. Mol. Biol. Evol. 30:2725-2729. DOI |
9 | Wyant, P. S., Gotthardt, D., Schafer, B., Krenz, B. and Jeske, H. 2011. The genomes of four novel begomoviruses and a new Sida micrantha mosaic virus strain from Bolivian weeds. Arch. Virol. 156:347-352. DOI |
10 | Zerbini, F. M., Briddon, R. W., Idris, A., Martin, D. P., Moriones, E., Navas-Castillo, J., Rivera-Bustamante, R., Roumagnac, P. and Varsani, A. 2017. ICTV virus taxonomy profile: Geminiviridae. J. Gen. Virol. 98:131-133. DOI |
11 | Briddon, R. W., Bull, S., Mansoor, S., Amin, I. and Markham, P. G. 2002. Universal primers for the PCR-mediated amplification of . Mol. Biotech. 20:315-318. DOI |
12 | Akhtar, S., Tahir, M. N., Baloch, G. R., Javaid, S., Khan, A. Q., Amin, I., Briddon, R. W. and Mansoor, S. 2014. Regional changes in the sequence of cotton leaf curl multan betasatellite. Viruses 6:2186-2203. DOI |
13 | Amin, I., Mansoor, S., Amrao, L., Hussain, M., Irum, S., Zafar, Y., Bull, S. E. and Briddon, R. W. 2006. Mobilisation into cotton and spread of a recombinant cotton leaf curl disease satellite. Arch. Virol. 151:2055-2065. DOI |
14 | Bach, J. and Jeske, H. 2014. Defective DNAs of beet curly top virus from long-term survivor sugar beet plants. Virus Res. 183:89-94. DOI |
15 | Baliji, S., Black, M. C., French, R., Stenger, D. C. and Sunter, G. 2004. Spinach curly top virus: a newly described curtovirus species from Southwest Texas with incongruent gene phylogenies. Phytopathology 94:772-779. DOI |
16 | Baliji, S., Sunter, J. and Sunter, G. 2007. Transcriptional analysis of complementary sense genes in Spinach curly top virus and functional role of C2 in pathogenesis. Mol. Plant-Microbe Interact. 20:194-206. DOI |
17 | Briddon, R. W., Bull, S. E., Amin, I., Idris, A. M., Mansoor, S., Bedford, I. D., Dhawan, P., Rishi, N., Siwatch, S. S., Abdel-Salam, A. M., Brown, J. K., Zafar, Y. and Markham, P. G. 2003. Diversity of , a satellite molecule associated with some monopartite begomoviruses. Virology 312:106-121. DOI |
18 | Briddon, R. W. and Stanley, J. 2006. Subviral agents associated with plant single-stranded DNA viruses. Virology 344:198-210. DOI |
19 | Briddon, R. W., Brown, J. K., Moriones, E., Stanley, J., Zerbini, M., Zhou, X. and Fauquet, C. M. 2008. Recommendations for the classification and nomenclature of the satellites of begomoviruses. Arch. Virol. 153:763-781. DOI |
20 | Brown, J. K., Zerbini, F. M., Navas-Castillo, J., Moriones, E., Ramos-Sobrinho, R., Silva, J. C., Fiallo-Olive, E., Briddon, R. W., Hernandez-Zepeda, C., Idris, A., Malathi, V. G., Martin, D. P., Rivera-Bustamante, R., Ueda, S. and Varsani, A. 2015. Revision of Begomovirus taxonomy based on pairwise sequence comparisons. Arch. Virol. 160:1593-1619. DOI |
21 | Lefeuvre, P., Martin, D. P., Hoareau, M., Naze, F., Delatte, H., Thierry, M., Varsani, A., Becker, N., Reynaud, B. and Lett, J. M. 2007. Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination. J. Gen. Virol. 88:3458-3468. DOI |
22 | Cui, X., Li, G., Wang, D., Hu, D. and Zhou, X. 2005. A begomovirus -encoded protein binds DNA, functions as a suppressor of RNA silencing, and targets the cell nucleus. J. Virol. 79:10764-10775. DOI |
23 | Doyle, J. J. and Doyle, J. L. 1990. Isolation of plant DNA from fresh tissue. Focus 12:13-15. |
24 | Hernandez, C. and Brown, J. 2010. First report of a new Curtovirus species, Spinach severe curly top virus, in commercial spinach plants (Spinacia oleracea) from south-central Arizona. Plant Dis. 94:917. |
25 | Liu, Y., Robinson, D. J. and Harrison, B. D. 1998. Defective forms of cotton leaf curl virus DNA-A that have different combinations of sequence deletion, duplication, inversion and rearrangement. J. Gen. Virol. 79:1501-1508. DOI |
26 | Jyothsna, P., Rawat, R. and Malati, V. G. 2011. Molecular characterization of a new begomovirus infecting a leguminous weed Rhynchosia minima in India. Virus Genes 42:407-414. DOI |
27 | Mansoor, S., Briddon, R. W., Zafar, Y. and Stanley, J. 2003. Geminivirus disease complexes: an emerging threat. Trends Plant Sci. 8:128-134. DOI |
28 | Mansoor, S., Zafar, Y. and Briddon, R. W. 2006. Geminivirus disease complexes: the threat is spreading. Trends Plant Sci. 11:209-212. DOI |
29 | Mubin, M., Briddon, R. W. and Mansoor, S. 2009. Diverse and recombinant DNA betasatellites are associated with a begomovirus disease complex of Digera arvensis, a weed host. Virus Res. 142:208-212. DOI |