Transcriptome Analysis of Early Responsive Genes in Rice during Magnaporthe oryzae Infection |
Wang, Yiming
(Department of Plant Microbe Interaction, Max Planck Institute for Plant Breeding Research)
Kwon, Soon Jae (Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University) Wu, Jingni (Department of Plant Microbe Interaction, Max Planck Institute for Plant Breeding Research) Choi, Jaeyoung (Department of Agricultural Biotechnology, Center for Fungal Genetic Resources and Center for Fungal Pathogenesis, Seoul National University) Lee, Yong-Hwan (Department of Agricultural Biotechnology, Center for Fungal Genetic Resources and Center for Fungal Pathogenesis, Seoul National University) Agrawal, Ganesh Kumar (Research Laboratory for Biotechnology and Biochemistry (RLABB)) Tamogami, Shigeru (Laboratory of Biologically Active Compounds, Department of Biological Production, Akita Prefectural University) Rakwal, Randeep (Research Laboratory for Biotechnology and Biochemistry (RLABB)) Park, Sang-Ryeol (Molecular Breeding Division, National Academy of Agricultural Science, RDA) Kim, Beom-Gi (Molecular Breeding Division, National Academy of Agricultural Science, RDA) Jung, Ki-Hong (Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University) Kang, Kyu Young (Plant Molecular Biology and Biotechnology Research Center/Division of Applied Life Science (BK21 Program), Gyeongsang National University) Kim, Sang Gon (Plant Molecular Biology and Biotechnology Research Center/Division of Applied Life Science (BK21 Program), Gyeongsang National University) Kim, Sun Tae (Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University) |
1 | Arlorio, M., Ludwig, A., Boller, T. and Bonfante, P. 1992. Inhibition of fungal growth by plant chitinases and -1,3-glucanases. Protoplasma 171:34-43. DOI |
2 | Acharya, B. R., Raina, S., Maqbool, S. B., Jagadeeswaran, G., Mosher, S. L., Appel, H. M., Schultz, J. C., Klessig, D. F. and Raina, R. 2007. Overexpression of CRK13, an Arabidopsis cysteine-rich receptor-like kinase, results in enhanced resistance to Pseudomonas syringae. Plant J. 50:488-499. DOI ScienceOn |
3 | Bagnaresi, P., Biselli, C., Orru, L., Urso, S., Crispino, L., Abbruscato, P., Piffanelli, P., Lupotto, E., Cattivelli, L. and Vale, G. 2012. Comparative transcriptome profiling of the early response to Magnaporthe oryzae in durable resistant vs susceptible rice (Oryza sativa L.) genotypes. PLoS One 7:e51609. DOI |
4 | Bennett, R. N. and Wallsgrove, R. M. 1994. Secondary metabolites in plant defence mechanisms. New Phytol. 127:617-633. DOI ScienceOn |
5 | Brutus, A., Sicilia, F., Macone, A., Cervone, F. and De Lorenzo, G. 2010. A domain swap approach reveals a role of the plant wall-associated kinase 1 (WAK1) as a receptor of oligogalacturonides. Proc. Natl. Acad. Sci. USA 107:9452-9457. DOI ScienceOn |
6 | Cantu, D., Vicente, A. R., Labavitch, J. M., Bennett, A. B. and Powell, A. L. 2008. Strangers in the matrix: Plant cell walls and pathogen susceptibility. Trends Plant Sci. 13:610-617. DOI ScienceOn |
7 | Cartwright, D. W., Langcake, P., Pryce, R. J., Leworthy, D. P. and Ride, J. P. 1981. Isolation and characterization of two phytoalexins from rice as momilactones A and B. Phytochemistry 20:535-537. DOI ScienceOn |
8 | Chinchilla, D., Zipfel, C., Robatzek, S., Kemmerling, B., Nurnberger, T., Jones, J. D., Felix, G. and Boller, T. 2007. A flagellin-induced complex of the receptor FLS2 and BAK1 initiates plant defence. Nature 448:497-500. DOI ScienceOn |
9 | Chen, K., Du, L. and Chen, Z. 2003. Sensitization of defense responses and activation of programmed cell death by a pathogen-induced receptor-like protein kinase in Arabidopsis. Plant Mol. Biol. 53:61-74. DOI ScienceOn |
10 | Chen, K., Fan, B., Du, L. and Chen, Z. 2004. Activation of hypersensitive cell death by pathogen-induced receptor-like protein kinases from arabidopsis. Plant Mol. Biol. 56:271-283. DOI |
11 | Chi, M. H., Park, S. Y., Kim, S. and Lee, Y. H. 2009. A novel pathogenicity gene is required in the rice blast fungus to suppress the basal defenses of the host. PLoS Pathog. 5:e1000401. DOI ScienceOn |
12 | Couch, B. C., Fudal, I., Lebrun, M. H., Tharreau, D., Valent, B., van Kim, P., Notteghem, J. L. and Kohn, L. M. 2005. Origins of host-specific populations of the blast pathogen Magnaporthe oryzae in crop domestication with subsequent expansion of pandemic clones on rice and weeds of rice. Genetics 170:613-630. DOI ScienceOn |
13 | Dardick, C. and Ronald, P. 2006. Plant and animal pathogen recognition receptors signal through non-RD kinases. PLoS Pathog. 2:e2. DOI |
14 | Datta, K., Velazhahan, R., Oliva, N., Ona, I., Mew, T., Khush, G.,S., Muthukrishnan, S. and Datta, S.,K. 1999. Over-expression of the cloned rice thaumatin-like protein (PR-5) gene in transgenic rice plants enhances environmental friendly resistance to rhizoctonia solani causing sheath blight disease. Theor. Appl. Genet. 98:1138-1145. DOI ScienceOn |
15 | Dunning, F. M., Sun, W., Jansen, K. L., Helft, L. and Bent, A. F. 2007. Identification and mutational analysis of Arabidopsis FLS2 leucine-rich repeat domain residues that contribute to flagellin perception. Plant Cell 19:3297-3313. DOI ScienceOn |
16 | Greeff, C., Roux, M., Mundy, J. and Petersen, M. 2012. Receptorlike kinase complexes in plant innate immunity. Front. Plant. Sci. 3:209. |
17 | Hasegawa, M., Mitsuhara, I., Seo, S., Imai, T., Koga, J., Okada, K., Yamane, H. and Ohashi, Y. 2010. Phytoalexin accumulation in the interaction between rice and the blast fungus. Mol. Plant-Microbe Interact. 23:1000-1011. DOI ScienceOn |
18 | Ederli, L., Madeo, L., Calderini, O., Gehring, C., Moretti, C., Buonaurio, R., Paolocci, F. and Pasqualini, S. 2011. The Arabidopsis thaliana cysteine-rich receptor-like kinase CRK20 modulates host responses to Pseudomonas syringae pv. tomato DC3000 infection. J. Plant Physiol. 168:1784-1794. DOI ScienceOn |
19 | Frederickson Matika, D. E. and Loake, G. J. 2014. Redox regulation in plant immune function. Antioxid. Redox Signal. doi:10.1089/ars.2013.5679. DOI ScienceOn |
20 | Hilaire, E., Young, S. A., Willard, L. H., McGee, J. D., Sweat, T., Chittoor, J. M., Guikema, J. A. and Leach, J. E. 2001. Vascular defense responses in rice: Peroxidase accumulation in xylem parenchyma cells and xylem wall thickening. Mol. Plant-Microbe Interact. 14:1411-1419. DOI ScienceOn |
21 | Iqbal, M. M., Nazir, F., Ali, S., Asif, M. A., Zafar, Y., Iqbal, J. and Ali, G. M. 2012. Over expression of rice chitinase gene in transgenic peanut (Arachis hypogaea L.) improves resistance against leaf spot. Mol. Biotechnol. 50:129-136. DOI ScienceOn |
22 | Iwai, T., Miyasaka, A., Seo, S. and Ohashi, Y. 2006. Contribution of ethylene biosynthesis for resistance to blast fungus infection in young rice plants. Plant Physiol. 142:1202-1215. DOI ScienceOn |
23 | Jones, J. D. and Dangl, J. L. 2006. The plant immune system. Nature 444:323-329. DOI ScienceOn |
24 | Kim, S. T., Yu, S., Kang, Y. H., Kim, S. G., Kim, J. Y., Kim, S. H. and Kang, K. Y. 2008. The rice pathogen-related protein 10 (JIOsPR10) is induced by abiotic and biotic stresses and exhibits ribonuclease activity. Plant Cell Rep. 27:593-603. DOI ScienceOn |
25 | Kim, S. T., Kim, S. G., Hwang, D. H., Kang, S. Y., Kim, H. J., Lee, B. H., Lee, J. J. and Kang, K. Y. 2004. Proteomic analysis of pathogen-responsive proteins from rice leaves induced by rice blast fungus, Magnaporthe grisea. Proteomics 4:3569-3578. DOI ScienceOn |
26 | Jwa, N. S., Agrawal, G. K., Tamogami, S., Yonekura, M., Han, O., Iwahashi, H. and Rakwal, R. 2006. Role of defense/stressrelated marker genes, proteins and secondary metabolites in defining rice self-defense mechanisms. Plant Physiol. Biochem. 44:261-273. DOI ScienceOn |
27 | Kawahara, Y., Oono, Y., Kanamori, H., Matsumoto, T., Itoh, T. and Minami, E. 2012. Simultaneous RNA-seq analysis of a mixed transcriptome of rice and blast fungus interaction. PLoS One 7:e49423. DOI |
28 | Kim, S. T., Kang, Y. H., Wang, Y., Wu, J., Park, Z. Y., Rakwal, R., Agrawal, G. K., Lee, S. Y. and Kang, K. Y. 2009. Secretome analysis of differentially induced proteins in rice suspensioncultured cells triggered by rice blast fungus and elicitor. Proteomics 9:1302-1313. DOI ScienceOn |
29 | Lecourieux, D., Ranjeva, R. and Pugin, A. 2006. Calcium in plant defence-signalling pathways. New Phytol. 171:249-269. DOI ScienceOn |
30 | Pandey, S. P. and Somssich, I. E. 2009. The role of WRKY transcription factors in plant immunity. Plant Physiol. 150:1648-1655. DOI ScienceOn |
31 | Lionetti, V., Raiola, A., Camardella, L., Giovane, A., Obel, N., Pauly, M., Favaron, F., Cervone, F. and Bellincampi, D. 2007. Overexpression of pectin methylesterase inhibitors in Arabidopsis restricts fungal infection by Botrytis cinerea. Plant Physiol. 143:1871-1880. DOI ScienceOn |
32 | Radauer, C., Lackner, P. and Breiteneder, H. 2008. The bet v 1 fold: An ancient, versatile scaffold for binding of large, hydrophobic ligands. BMC Evol. Biol. 8:286. DOI ScienceOn |
33 | McGee, J. D., Hamer, J. E. and Hodges, T. K. 2001. Characterization of a PR-10 pathogenesis-related gene family induced in rice during infection with Magnaporthe grisea. Mol. Plant-Microbe Interact. 14:877-886. DOI ScienceOn |
34 | Mittler, R., Vanderauwera, S., Gollery, M. and Van Breusegem, F. 2004. Reactive oxygen gene network of plants. Trends Plant Sci. 9:490-498. DOI ScienceOn |
35 | Pang, C. H., Li, K. and Wang, B. 2011. Overexpression of Ss-CHLAPXs confers protection against oxidative stress induced by high light in transgenic Arabidopsis thaliana. Physiol. Plant. 143:355-366. DOI ScienceOn |
36 | Ramalingam, J., Vera Cruz, C. M., Kukreja, K., Chittoor, J. M., Wu, J. L., Lee, S. W., Baraoidan, M., George, M. L., Cohen, M. B., Hulbert, S. H., Leach, J. E. and Leung, H. 2003. Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice. Mol. Plant-Microbe Interact. 16:14-24. DOI ScienceOn |
37 | Rasmussen, M. W., Roux, M., Petersen, M. and Mundy, J. 2012. MAP kinase cascades in Arabidopsis innate immunity. Front. Plant. Sci. 3:169. |
38 | Ribot, C., Hirsch, J., Balzergue, S., Tharreau, D., Notteghem, J. L., Lebrun, M. H. and Morel, J. B. 2008. Susceptibility of rice to the blast fungus, Magnaporthe grisea. J. Plant Physiol. 165:114-124. DOI ScienceOn |
39 | Ross, C. A., Liu, Y. and Shen, Q. J. 2007. The WRKY gene family in rice (Oryza sativa). J. Integr. Plant Biol. 49:827-842. DOI ScienceOn |
40 | Shimono, M., Sugano, S., Nakayama, A., Jiang, C. J., Ono, K., Toki, S. and Takatsuji, H. 2007. Rice WRKY45 plays a crucial role in benzothiadiazole-inducible blast resistance. Plant Cell. 19:2064-2076. DOI ScienceOn |
41 | Ryu, H. S., Han, M., Lee, S. K., Cho, J. I., Ryoo, N., Heu, S., Lee, Y. H., Bhoo, S. H., Wang, G. L., Hahn, T. R. and Jeon, J. S. 2006. A comprehensive expression analysis of the WRKY gene superfamily in rice plants during defense response. Plant Cell Rep. 25:836-847. DOI ScienceOn |
42 | Sels, J., Mathys, J., De Coninck, B. M., Cammue, B. P. and De Bolle, M. F. 2008. Plant pathogenesis-related (PR) proteins: A focus on PR peptides. Plant Physiol. Biochem. 46:941-950. DOI ScienceOn |
43 | Shimono, M., Koga, H., Akagi, A., Hayashi, N., Goto, S., Sawada, M., Kurihara, T., Matsushita, A., Sugano, S., Jiang, C. J., Kaku, H., Inoue, H. and Takatsuji, H. 2012. Rice WRKY45 plays important roles in fungal and bacterial disease resistance. Mol. Plant. Pathol. 13:83-94. DOI ScienceOn |
44 | Singh, M. P., Lee, F. N., Counce, P. A. and Gibbons, J. H. 2004. Mediation of partial resistance to rice blast through anaerobic induction of ethylene. Phytopathology 94:819-825. DOI ScienceOn |
45 | Steinwand, B. J. and Kieber, J. J. 2010. The role of receptorlike kinases in regulating cell wall function. Plant Physiol. 153:479-484. DOI ScienceOn |
46 | Talbot, N. J. 2003. On the trail of a cereal killer: Exploring the biology of Magnaporthe grisea. Annu. Rev. Microbiol. 57:177-202. DOI ScienceOn |
47 | Tamogami, S. and Kodama, O. 2000. Coronatine elicits phytoalexin production in rice leaves (Oryza sativa L.) in the same manner as jasmonic acid. Phytochemistry 54:689-694. DOI ScienceOn |
48 | Wei, T., Ou, B., Li, J., Zhao, Y., Guo, D., Zhu, Y., Chen, Z., Gu, H., Li, C., Qin, G. and Qu, L. J. 2013. Transcriptional profiling of rice early response to Magnaporthe oryzae identified Os-WRKYs as important regulators in rice blast resistance. PLoS One. 8:e59720. DOI |
49 | Thimm, O., Blasing, O., Gibon, Y., Nagel, A., Meyer, S., Kruger, P., Selbig, J., Muller, L. A., Rhee, S. Y. and Stitt, M. 2004. MAPMAN: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J. 37:914-939. DOI ScienceOn |
50 | Wang, Y., Kim, S. G., Wu, J., Huh, H. H., Lee, S. J., Rakwal, R., Agrawal, G. K., Park, Z. Y., Kang, K. Y. and Kim, S. T. 2013. Secretome analysis of the rice bacterium Xanthomonas oryzae (Xoo) using in vitro and in planta systems. Proteomics 13:1901-1912. DOI ScienceOn |
51 | Wettenhall, J. M. and Smyth, G. K. 2004. limmaGUI: A graphical user interface for linear modeling of microarray data. Bioinformatics 20:3705-3706. DOI ScienceOn |
52 | Wu, J., Wang, Y., Kim, S. T., Kim, S. G. and Kang, K. Y. 2013. Characterization of a newly identified rice chitinase-like protein (OsCLP) homologous to xylanase inhibitor. BMC Biotechnol. 13:4. DOI ScienceOn |
53 | Xie, X. Z., Xue, Y. J., Zhou, J. J., Zhang, B., Chang, H. and Takano, M. 2011. Phytochromes regulate SA and JA signaling pathways in rice and are required for developmentally controlled resistance to Magnaporthe grisea. Mol. Plant. 4:688-696. DOI ScienceOn |
54 | Yamane, H. 2013. Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem. 77:1141-1148. DOI ScienceOn |
55 | Zhao, C. J., Wang, A. R., Shi, Y. J., Wang, L. Q., Liu, W. D., Wang, Z. H. and Lu, G. D. 2008. Identification of defenserelated genes in rice responding to challenge by Rhizoctonia solani. Theor. Appl. Genet. 116:501-516. DOI |
56 | Kim, S. G., Wang, Y., Lee, K. H., Park, Z. Y., Park, J., Wu, J., Kwon, S. J., Lee, Y. H., Agrawal, G. K., Rakwal, R., Kim, S. T. and Kang, K. Y. 2013. In-depth insight into in vivo apoplastic secretome of rice-Magnaporthe oryzae interaction. J. Proteomics 78:58-71. DOI ScienceOn |
57 | Kodama, O., Miyakawa, J., Akatsuka, T. and Kiyosawa, S. 1992. Sakuranetin, a flavanone phytoalexin from ultraviolet-irradiated rice leaves. Phytochemistry 31:3807-3809. DOI ScienceOn |
58 | He, Z. H., Fujiki, M. and Kohorn, B. D. 1996. A cell wall-associated, receptor-like protein kinase. J. Biol. Chem. 271:19789- 19793. DOI ScienceOn |