Differential Proteomic Analysis of Secreted Proteins from Cutinase-producing Bacillus sp. SB-007
![]() |
Ban, Yeon-Hee
(School of Life Science, Chungbuk National University)
Jeon, Mi-Ri (College of Agriculture, Life & Environmental Sciences, Chungbuk National University) Yoon, Ji-Hee (Graduate School of Semiconductor and Chemical Engineering, Chonbuk National University) Park, Jae-Min (School of Life Science, Chungbuk National University) Um, Hyun-Ju (School of Life Science, Chungbuk National University) Kim, Dae-Soon (School of Life Science, Chungbuk National University) Jung, Seung-Ki (Bioresource Inc.) Kim, Keun-Young (Bioresource Inc.) Lee, Jee-Won (Department of Chemical and Biological Engineering, Korea University) Min, Ji-Ho (Graduate School of Semiconductor and Chemical Engineering, Chonbuk National University) Kim, Yang-Hoon (School of Life Science, Chungbuk National University) |
1 | Murphy, C. A., Cameron, J. A., Huang, S. J. and Vinopal, R. T. 1998. A second polycaprolactone depolymerase from Fusarium, a lipase distant from cutinase. Appl. Microbiol. Biotechnol. 50:692-696. DOI ScienceOn |
2 | Sinchaikul, S., Sookkheo, B., Topanuruk, S., Juan, H. F., Phutrakul, S. and Chen, S. T. 2002. Bioinformatics, functional genomics, and proteomics study of Bacillus sp. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 771:261-287. DOI ScienceOn |
3 | Jongbloed, J. D., Antelmann, H., Hecker, M., Nijland, R., Bron, S., Airaksinen, U., Pries, F., Quax, W. J., van Dijl, J. M., Braun, P. G. 2002. Selective contribution of the twin-arginine translocation pathway to protein secretion in Bacillus subtilis. J. Biol. Chem. 277:44068-44078. DOI ScienceOn |
4 | Kim, D. H. 2003. Modulation of a fungal signaling by Hypovirus. Plant Pathol. J. 19:30-33. DOI ScienceOn |
5 | Kim, Y. H., Ahn, J. Y., Moon, S. H. and Lee, J. 2005. Biodegradation and detoxification of organophosphate insecticide, malathion by Fusarium oxysporum f. sp. pisi cutinase. Chemosphere 60:1349-1355. DOI ScienceOn |
6 | Antelmann, H., Sapolsky, R., Miller, B., Ferrari, E., Chotani, G., Weyler, W., Gaertner, A. and Hecker, M. 2004. Quantitative proteome profiling during the fermentation process of pleiotropic Bacillus subtilis mutants. Proteomics 4:2408-2424. DOI ScienceOn |
7 | Antelmann, H., Darmon, E., Noone, D., Veening, J. W., Westers, H., Bron, S., Kuipers, O. P., Devine, K. M., Hecker, M. and van Dijl, J. M. 2003. The extracellular proteome of Bacillus subtilis under secretion stress conditions. Mol. Microbiol. 49:143-156. DOI ScienceOn |
8 | Chen, Z., Franco, C. F., Baptista, R. P., Cabral, J. M., Coelho, A. V., Rodrigues, C. J. Jr. and Melo, E. P. 2006. Purification and identification of cutinase from Colletotrichum kahawae and Colletotrichum gloeosporioides. Appl. Microbiol. Biotechnol. 73:1306-1313. DOI ScienceOn |
9 | Chu, P. W., Yap, M. N., Wu, C. Y., Huang, C. M., Pan, F. M., Tseng, M. J. and Chen, S. T. 2000. A proteomic analysis of secreted proteins from xylan-induced Bacillus sp. strain K-1. Electrophoresis 21:1740-1745. DOI ScienceOn |
10 | Coppee, J. Y., Auger, S., Turlin, E., Sekowska, A., Le Caer, J. P., Labas, V., Vagner, V., Danchin, A. and Martin-Verstraete, I. 2001. Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study. Microbiology 147:1631-1640. DOI |
11 | Dartois, V., Baulard, A., Schanck, K. and Colson, C. 1992. Cloning, nucleotide sequence and expression in Escherichia coli of a lipase gene from Bacillus subtilis 168. Biochim. Biophys. Acta. 1131:253-260. DOI ScienceOn |
12 | Eggert, T., Pencreac'h, G., Douchet, I., Verger, R. and Jaeger, K. E. 2000. A novel extracellular esterase from Bacillus subtilis and its conversion to a monoacylglycerol hydrolase. Eur. J. Biochem. 267:6459-6469. DOI ScienceOn |
13 | Egmond, M. R. and de Vlieg, J. 2000. Fusarium solani pisi cutinase. Biochimie 82:1015-1021. DOI ScienceOn |
14 | Yoshida, K., Kobayashi, K., Miwa, Y., Kang, C. M., Matsunaga, M., Yamaguchi, H., Tojo, S., Yamamoto, M., Nishi, R., Ogasawara, N., Nakayama, T. and Fujita, Y. 2001. Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Res. 29:683-692. DOI ScienceOn |
15 | Buttner, K., Bernhardt, J., Scharf, C., Schmid, R., Mader, U., Eymann, C., Antelmann, H., Volker, A., Volker, U. and Hecker, M. 2001. A comprehensive two-dimensional map of cytosolic proteins of Bacillus subtilis. Electrophoresis 22:2908-2935. DOI ScienceOn |
16 | Chander, H. and Ranganathan, G. 1975. Role of amino acids on the growth and lipase production of Streptococcus faecalis. Experientia 31:1263. |
17 | Antelmann, H., Tjalsma, H., Voigt, B., Ohlmeier, S., Bron, S., van Diji, J. M. and Hecker, M. 2001. A proteomic view on genome-based signal peptide predictions. Genome Res. 11:1484-1502. DOI ScienceOn |
18 | Voigt, B., Schweder, T., Sibbald, M. J., Albrecht, D., Ehrenreich, A., Bernhardt, J., Feesche, J., Maurer, K. H., Gottschalk, G., van Dijl, J. M. and Hecker, M. 2006. The extracellular proteome of Bacillus licheniformis grown in different media and under different nutrient starvation conditions. Proteomics 6:268-281. DOI ScienceOn |
19 | van Dijl, J. M., Bolhuis, A., Tjalsma, H., Jongbloed, J. D. H., de Jong, A. and Bron, S. 2001. Protein transport pathways in Bacillus subtilis: a genome-based road map. In: Bacillus Subtilis and its Closest Relatvies: from Genes to Cells., ed. by A. L. Sonenshein, J. A. Hoch and R. Losick., pp. 337-355. American Society for Microbiology Press, Washington, DC, USA. |
20 | Soliday, C. L. and Kolattukudy, P. E. 1983. Primary structure of the active site region of fungal cutinase, an enzyme involved in phytopathogenesis. Biochem Biophys Res Commun. 114:1017-1022. DOI ScienceOn |
21 | Staley, J. T., Bryant, M. P., Pfennig, N. and Holt, J. G. 1989. Bergey's Manual of Systematic Bacteriology, Vol. 3, ed. by Williams and Wilkins, Baltimore. |
22 | Thierry, R. 1999. Silver staining of 2-D electrophoresis gels. Methods Mol. Biol. 112:297-311. |
23 | Tjalsma, H., Antelmann, H., Jongbloed, J. D., Braun, P. G., Darmon, E., Dorenbos, R., Dubois, J. Y., Westers, H., Zanen, G., Quax, W. J., Kuipers, O. P., Bron, S., Hecker, M., van Dijl, J. M. 2004. Proteomics of protein secretion by Bacillus subtilis: separating the "secrets" of the secretome. Microbiol. Mol. Biol. Rev. 68:207-233. DOI ScienceOn |
24 | Um, H. J., Seo, H. S., Min, J. H., Rhee, S. K., Cho, T. J., Kim, Y. H. and Lee, J. W. 2007. Pseudozyma jejuensis sp. nov., a novel cutinolytic ustilaginomycetous yeast species that is able to degrade plastic waste. FEMS Yeast Res. 7:1035-1045. DOI ScienceOn |
25 | Wilhelm, S. 1993. The role of cutinase in fungal pathogenicity. Trends Microbiol. 1:69-71. DOI ScienceOn |
26 | Williams, S. T., Sharpe, M. E. and Holt, J. G. 1989. Bergey's Manual of Systematic Bacteriology, Vol. 4. ed. by Williams and Wilkins, Baltimore. |
27 | Lin, T. S. and Kolattukudy, P. E. 1980. Structural studies on cutinase, a glycoprotein containing novel amino acids and glucuronic acid amide at the N terminus. Eur. J. Biochem. 106:341-351. DOI ScienceOn |
28 | Vilain, S. and Brozel, V. S. 2006. Multivariate approach to comparing whole-cell proteomes of Bacillus cereus indicates a biofilm-specific proteome. J. Proteome Res. 5:1924-1930. DOI ScienceOn |
29 | Voigt, B., Hoi le, T., Jurgen, B., Albrecht, D., Ehrenreich, A., Veith, B., Evers, S., Maurer, K. H., Hecker, M. and Schweder, T. 2007. The glucose and nitrogen starvation response of Bacillus licheniformis. Proteomics 7:413-423. DOI ScienceOn |
30 | Honjo, M., Nakayama, A., Fukazawa, K., Kawamura, K., Ando, K., Hori, M. and Furutani, Y. 1990. A novel Bacillus subtilis gene involved in negative control of sporulation and degradative-enzyme production. J. Bacteriol. 172:1783-1790. DOI |
31 | Majoul, T., Bancel, E., Triboi, E., Hamida, J. B. and Branlard, G. 2003. Proteomic analysis of the effect of heat stress on hexaploid wheat grain: characterization of heat-responsive proteins from total endosperm. Proteomics 3:175-183. DOI ScienceOn |
32 | Poulsen, K. R., Sorensen, T. K., Duroux, L., Petersen, E. I., Petersen, S. B. and Wimmer, R. 2006. The interaction of Fusarium solani pisi cutinase with long chain spin label esters. Biochemistry 45:9163-9171. DOI ScienceOn |
33 | Schaad, N. W. 1988. Laboratory Guide for Identification of Plant Pathogenic Bacteria 2nd Edition. |
34 | Shimao, M. 2001. Biodegradation of plastics. Curr. Opin. Biotechnol. 12:242-247. DOI ScienceOn |
35 | Petersen, M. T. N., Martel, P., Petersen, E. I., Drablos, F. and Pertersen, S. B. 1997. Surface and electrostatics of cutinases. Methods in enzymology Vol. 284, ed. by B. Rubin and E.A. Dennis, pp. 130-154. Academics, New York. |
36 | Gerard, H. C., Fett, W. F., Osman, S. F. and Moreau, R. A. 1993. Evaluation of cutinase activity of various industrial lipases. Biotechnol. Appl. Biochem. 17:181-189. |
37 | Poulose, A. J. and Kolattukudy, P. 1988. Enzymes as agricultural chemical adjuvants. European Patent 0,272,002 A1. |
38 | Masayama, A., Kuwana, R., Takamatsu, H., Hemmi, H., Yoshimura, T., Watabe, K. and Moriyama, R. 2007. A novel lipolytic enzyme, YcsK (LipC), located in the spore coat of Bacillus subtilis, is involved in spore germination. J. Bacteriol. 189:2369-2375. DOI ScienceOn |
39 | Flipsen, J. A. C., Appel, A. C. M., Van der Hijden, H. T. W. M. and Verrips, C.T. 1998. Mechanism of removal of immobilized triacylglycerol by lipolytic enzymes in a sequential laundry wash process. Enzyme Micro. Technol. 23:274-280. DOI ScienceOn |
40 | Hirose, I., Sano, K., Shioda, I., Kumano, M., Nakamura, K. and Yamane, K. 2000. Proteome analysis of Bacillus subtilis extracellular proteins: a two-dimensional protein electrophoretic study. Electrophoresis 146:65-75. |
41 | Kim, Y. H., Lee, J., Ahn, J. Y., Gu, M. B. and Moon, S. H. 2002. Enhanced degradation of an endocrine-disrupting chemical, butyl benzyl phthalate, by Fusarium oxysporum f. sp. pisi cutinase. Appl. Environ. Microbiol. 68:4684-4688. DOI ScienceOn |
42 | Kim, Y. H., Lee, J. and Moon, S. H. 2003. Uniqueness of microbial cutinases in hydrolysis of p-nitrophenyl esters. J. Microbiol. Biotechnol. 13:57-63. |
43 | Kolattukudy, P. E. 1984. Cutinase from fungi and pollen. In: Lipase, ed. by B. Borgstrom and T. Brockman, pp. 471-504. Elsevier, Amsterdam. |
44 | Martinez, C., De Geus, P., Lauwereys, M., Matthysens, G. and Cambillau, C. 1992. Fusarium solani cutinase is a lipolytic enzyme with a catalytic serine accessible to solvent. Nature 356:615-618. DOI ScienceOn |
45 | Cristina, M. L. C., Maria, R. A. B. and Joaquim, M. S. C. 1998. Cutinase structure, function and biocatalytic applications. Electronic J. Biotechnol. 1:160-173. DOI |
46 | Cristina, M. L. C., Maria, R. A. B. and Joaquim, M. S. C. 1999. Cutinase: from molecular level to bioprocess development. Biotechnol. Bioeng. 66:17-34. DOI ScienceOn |
47 | Eggert, T., van Pouderoyen, G., Dijkstra, B. W. and Jaeger, K. E. 2001. Lipolytic enzymes LipA and LipB from Bacillus subtilis differ in regulation of gene expression, biochemical properties, and three-dimensional structure. FEBS Lett. 502:38-92. |
48 | Martin-Verstraete, I., Deutscher, J., Galinier, A. 1999. Phosphorylation of HPr and Crh by HprK, early steps in the catabolite repression signalling pathway for the Bacillus subtilis levanase operon. J. Bacteriol. 181:2966-2969. |
![]() |