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http://dx.doi.org/10.5423/PPJ.2003.19.1.001

Recent Progress in the Evolution and Ecology of Actinorhizal Symbioses  

Jeong, Soon-Chun (Laboratory of Plant Genome Research, Korea Research Institute of Bioscience and Biotechnology)
David D. Myrold (Department of Crop and Soil Science, Oregon State University)
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The Plant Pathology Journal / v.19, no.1, 2003 , pp. 1-8 More about this Journal
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1 Benecke, U. 1969. Symbiosis of alder nodules in New Zealand. Plant Soil 30: 145-149   DOI
2 Bousquet, J. and Lalonde, M. 1990. The Genetics of Actinorhizal Betulaceae. In: The Biology of Frankia and Actinorhizal Plants, ed. by C. R. Schwintzer and J. D. Tjepkema, 239-261pp. Academic Press, Inc., San Diego
3 Clawson, M. L. and Benson, D. R. 1999. Natural diversity of Frankia strains in actinorhizal root nodules from promiscuous hosts in the family Myricaceae. Appl. Environ. Microbiol. 65:4521-7
4 Cournoyer, B. and Lavire, C. 1999. Analysis of Frankia evolu-tionary radiation using glnII sequences. FEMS Microbiol Lett. 177:29-34   DOI   ScienceOn
5 Dawson, J. O. 1983. Dinitrogen fixation in forest ecosystems. Can. J. Microbiol. 29:979-992   DOI
6 Doran, T. J., Hodgson, A. L. M., Davies, J. K. and Radford, A. J. 1993. Characterisation of a highly repeated DNA sequence from Mycrobacterium bovis. FEMS Microbiol. Lett. 111:147-152   DOI   PUBMED
7 Gauthier, D., Jaffre, T. and Prin, Y. 2000. Abundance of Frankia from Gymnostoma spp. in the rhizosphere of Alphitonia neo-caledonica, a non-nodulated Rhamnaceae endemic to New Caledonia. Eur. J. Soil Biol. 36:169-175   DOI   ScienceOn
8 Huguet, V., Batzli, J. M., Zimpfer, J. F., Normand, P., Dawson, J. O. and Fernandez, M. P. 2001. Diversity and specificity of Frankia strains in nodules of sympathc Myrica gate, Alnus incana, and Shepherdia canadensis determined by rrs gene polymorphism. Appl. Environ. Microbiol. 67:2116-2122   DOI   ScienceOn
9 Huss-Danell, K. and Myrold, D. D. 1994. Intragenenc variation in nodulation of Alnus: Consequences for quantifying Frankia infective units in soil. Soil Biol. Biochem. 26:525-531   DOI   ScienceOn
10 Jeong, S. C., Liston, A. and Myrold, D. D. 1997. Molecular phy-logeny of the genus Ceanothus (Rhamnaceae) using rbcL and ndhF sequences. Theo. Appl. Genet. 94:852-857   DOI   ScienceOn
11 Jeong, S. C. and Myrold, D. D. 1999. Genomic fingerprinting of Frankia microsymbionts from Ceanothus copopulations using repetitive sequences and polymerase chain reactions. Can. J. Bot. 77:1220-1230   DOI
12 Navarro, E., Jaffre, T., Gauthier, D., Gourbiere, F., Rinaudo, G., Simonet, P. and Normand, P. 1999. Distribution of Gymnos-toma spp. microsymbiotic Frankia strains in New Caledonia is related to soil type and to host-plant species. Mol. Ecol. 8:1781-1788   DOI   ScienceOn
13 Ramirez-Saad, H., Janse, J. D. and Akkermans, A. D. L. 1998. Root nodules of Ceanothus caeruleus contain both the $N_2$-fix-ing Frankia endophyte and a phylogenetically related Nod/ Fix actinomycete. Can. J. Microbiol. 44:140-148   DOI   ScienceOn
14 Newcomb, W. and Wood, S. M. 1987. Morphogenesis and fine structure of Frankia (Actinomycetales): the microsymbiont of nitrogen-fixing actinorhizal root nodules. Int. Rev. Cytol. 109:1-88   DOI
15 Normand, P., Orso, S., Cournoyer, B., Jeannin, P., Chapelon, C., Dawson, J., Evtushenko, L. and Misra, A. K. 1996. Molecular phylogeny of the genus Frankia and related genera and emen-dation of the family Frankiaceae. Int. J. System. Bacteriol. 46:1-9   DOI   ScienceOn
16 Picard, C., Ponsonnt, C., Paget, E., Nesme, X. and Simonet, P. 1992. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl. Envi-ron. Microbiol. 58:2717-2711
17 Scott, W. 1973. Some soil factors affecting snowbrush nodula-tion. Ph.D. Thesis. Oregon State Univ., Corvallis, OR. (Diss. Abstr. 33:4074)
18 Smolander, A. and Sundman, V. 1987. Frankia in acid soils of forests devoid of actinorhizal plants. Physiol. Plant 70:297-303   DOI
19 Sprent, J. I. 1994. Evolution and diversity in the legume-rhizo-bium symbiosis: chaos theory? Plant Soil 161:1-10   DOI   ScienceOn
20 Wall, L. G. 2000. The Actinorhizal Symbiosis. J. Plant Growth Reg. 19:167-182
21 Richards, J. W., Krumholz, G. D., Chval, M. S. and Tisa, L. S. 2002. Heavy metal resistance patterns of Frankia strains. Appl. Environ. Microbiol. 68:923-927   DOI   ScienceOn
22 Myrold, D. D. and Huss-Danell, K. 1994. Population dynamics of Alnfs-infective Frankia in a forest soil with and without host trees. Soil Biol. Biochem. 26:533-540   DOI   ScienceOn
23 Ritchie, N. J. and Myrold, D. D. 1999. Geographic distribution and genetic diversity of Ceanothus-infective Frankia strains. Appl. Environ. Microbiol. 65:1378-1383
24 Cronquist, A. 1988. The Evolution and Classification of Flower-ing Plants, 2nd ed. Allen, Lawrence, Kansas
25 Jeong, S. C., Ritchie, N. J. and Myrold, D. D. 1999. Molecular phylogenies of plants and Frankia support multiple origins of actinorhizal symbioses. Mol. Phylogen. Evol. 13:493-503   DOI   ScienceOn
26 Torrey, J. G. 1978. Nitrogen fixation by actinomycete-nodulated angiosperms. BioSci. 28:586-591   DOI   ScienceOn
27 Torrey, J. G. and Tjepkema, J. D. 1979. Preface. Bot. Gaz, 140(Suppl): i-ii.   DOI   ScienceOn
28 Benson, D. R. and Silvester, W. B. 1993. Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Micro-biol. Rev. 57:293-319
29 Murry, M. A., Zhang, D., Schneider, M. and de Bruijn, F. J. 1995. Use of repetitive sequences and the polymerase chain reaction (rep-PCR) to fingerprint the genomes of Frankia isolates. Symbiosis 19:223-240
30 Nickel, A., Pelz, O., Hahn, D., Saurer, M., Siegwolf, R. and Zeyer, J. 2001. Effect of inoculation and leaf litter amendment on establishment of nodule-forming Frankia populations in soil. Appl. Environ. Microbiol. 67:2603-2609   DOI   ScienceOn
31 Rouvier, C., Prin, Y., Redell, P., Normand, P. and Simonet, P. 1996. Genetic diversity among Frankia strains nodulating members of the family Casuarinaceae in Australia revealed by PCR and restriction fragment length polymorphism analysis with crushed root nodules. Appl. Environ. Microbiol. 62:979-985
32 Sadowsky, M. J., Kinkel, L. L., Bowers, J. H. and Schottel, J. L. 1996. Use of repetitive intergenic DNA sequences to classify pathogenic and disease-supressive Streptomyces strains. Appl. Environ. Microbiol. 62:3489-3493
33 Crannell, W. K., Tanaka, Y. and Myrold, D. D. 1994. Calcium and pH interaction on root nodulation of nursery grown red alder (Alnus rubra Bong.) seedlings by Frankia. Soil Biol. Biochem. 26:607-614   DOI   ScienceOn
34 Perez, N.-O., Vasquez, L. and Valdes, M. 1999. Genetic charac-terization of Mexican Frankia strains nodulating Casuarina equisetfolia. Can. J. Bot. 77:1214-1219   DOI
35 Page, R. D. M. 1994. Parallel phylogenies: Reconstructing the history of host-parasite assemblages. Clastistics 10:155-173   DOI   ScienceOn
36 Hibbs, D. E. and Cromack, Jr., K. 1990. Actinorhizal plants in Pacific Northwest forests. In: The Biology of Frankia and Actinorhizal Plants, ed. by C.R. Schwintzer and J.D. Tjep-kema, 343-363pp. Academic Press, Inc., San Diego
37 McMinn, H. E. 1942. Ceanothus: Part II; a systematic study of the genus Ceanothus. 129-308 pp. Santa Barbara Botanic Garden, Santa Barbara
38 Soltis, D. E., Soltis, P. S., Morgan, D. R., Swensen, S. M., Mullin, B. C., Dowd, J. M. and Martin, P. G. 1995. Chloroplast gene sequence data suggest a single origin of the predisposition for symbiotic nitrogen fixation in angiosperms. Proc. Natl Acad. Sci. USA 92:2647-2651   DOI   ScienceOn
39 Tisa, L. S., Chval, M. S., Krumholz, G. D. and Richards, J. W. 1999. Antibiotic resistance patterns of Frankia strains. Can. J. Bot. 77:1257-1260   DOI
40 Maunuksela, L., Zepp, K., Koivula, Y., Zeyer, J., Haahtela, K. and Hahn, D. 1999. Analysis of Frankia populations in three soils devoid of actinorhizal plants. FEMS Microbiol. Ecol. 28:11-21   DOI   ScienceOn
41 Diem, H. G. and Dommergues, Y. R. 1990. Current and potential uses and management of Casuarinaceae in the tropics and subtropics. In: The Biology of Frankia and Actinorhizal Plants, ed. by C.R. Schwintzer and J.D. Tjepkema, 317-342 pp. Academic Press, Inc., San Diego
42 Zimpfer, J. F., Kennedy, G. J., Smyth, C. A., Hamelin, J., Navarro, E. and Dawson, J. O. 1999. Localization of Casua-rina-infective Frankia near Casuarina cunninghamiana trees in Jamaica. Can. J. Bot. 77:1248-1256   DOI
43 Navarro, E., Nalin, R., Gauthier, D. and Normand, P. 1997. The nodular microsymbionts of Gymnostoma spp. are Elaeagnus-infective Frankia strains. Appl. Environ. Microbiol. 63:1610-1616
44 Chase M. W., Soltis, D. E., Olmstead, R. G.,. Morgan, D., Les, D. H., Mishler, B. D., Duvall, M. R., Price, R. A., Hills, H.G., Qui, Y.-L., Kron, K. A., Rettig, J. H., Conti, E., Palmer, J. D., Manhart, J. R., Sytsma, K. J., Michaels, H. J., Kress, W. J., Karol, K. G., Clark, W. D., Hedren, M., Gaut, B. S., Jansen, R. K., Kim, K.-J., Wimpee, C. R, Smith, J. R, Furnier, G. R., Strauss, S. H., Xiang, G.-Y., Plunkett, G. M., Soltis, P. S., Swensen, S. M., Williams, S. E., Gadek, P. A., Quinn, C. J., Eguiarte, L. E., Golenberg, E., Learn, Jr., G. H., Graham, S. W., Barrett, S. C. H., Dayanandan, S. and Albert, V. A. 1993. Phylogenetics of seed plants: An analysis of nucleotide sequences from .the plastid gene rbcL. Ann. Mo. Bot. Gard. 80:528-580   DOI   ScienceOn
45 van Dijk, C. 1984. Ecological aspects of spore formation in the Frankia-Alnus symbiosis. Ph.D. Thesis. State University, Leiden, the Netherlands. 154 p.
46 Moran, N. A., Munson, M. A., Bauman, P. and Ishikawa, H. 1993. A molecular clock in endosymbiotic bacteria is cali-brated using the insect hosts. Proc. R. Soc. Lond. B Biol. Sci. 253:167-171   DOI   ScienceOn
47 Soltis, D. E., Soltis, P. S., Chase, M. W., Mort, M. E., Albach, D. C., Zanis, M., Savolainen, V., Hahn, W. H., Hoot, S. B., Fay, M. F., Axtell, M., Swensen, S. M., Prince, Li. M., Kress, W. J., Nixon, K. C. and Farris, J. S. 2000. Angiosperm phytogeny inferred from 18S rDNA, ,rbcL, and atpB sequences. Bot. J. Linnean Soc. 133:381-461   DOI
48 Versalovic, J., Koeuth, T. and Lupski, J. R. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fin-gerprinting of bacterial genomes. Nucleic Acids Res. 24:6823-6831
49 Versalovic, J., Schneider, M., de Bruijn, F. J. and Lupski, J. R. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5:25-40
50 Albert, V. A., Backlund, A., Bremer, K., Chase, M. W., Manhart, J. R., Mishler, B. D. and Nixon, K. C. 1994. Functional con-straints and rbcL evidence for land plant phylogeny. Ann. Mo. Bot. Gard. 81:534-567   DOI   ScienceOn
51 Wheeler, C. T. and Miller, I. M. 1990. Current and potential uses of actinorhizal plants in Europe. In: The Biology of Frankia and Actinorhizal Plants, ed. by C.R. Schwintzer and J.D. Tjep-kema, 365-389 pp. Academic Press, Inc., San Diego
52 Hilger, A. B. and Myrold, D. D. 1992. Quantitation of soil Frankia by bioassay and gene probe methods: response to host and non-host rhizospheres and liming. Acta Ecol. 13:505-506
53 Hahn, D., Kester, R., Starrenburg, M. J. C. and Akkermans, A. D. L 1990. Extraction of ribosomal RNA from soil for detection of Frankia with oligonucleotide probes. Arch. Microbiol. 154:329-335   DOI
54 Lalonde, M., Simon, L., Bousquet, J. and Seguin A. 1988. Advances in the taxonomy of Frankia: recognition of species alni and eleagni and novel subspecies pommerii and vandijkii. In: Nitrogen Fixation: Hundred Years After, ed. by H. Bothe H, F.J. de Bruijn, and W.E. Newton WE, 671-680 pp. Gustav Fisher Verlag, Stutgart
55 Simonet, P., Normand, P., Moiroud, A. and Bardin, R. 1990. Identification of Frankia strains in nodules by hybridization of polymerase chain reaction products with strain-specific oligo-nucleotide probes. Arch. Microbiol. 153:235-240   DOI   ScienceOn
56 van Dijk, C., Sluimer, A. and Weber, A. 1988. Host range differ-entiation of spore-positive and spore-negative strain types of Frankia in stands of Alnus glutinosa and Alnus incana in Fin-land. Physiol. Plant 72:349-358   DOI
57 Brunchorst, J. 1887. Die Struktur der Inhaltsk$\ddot u$rper in den Zellen einiger Wurzelanschwellungen. Bergens Mus. Aarsb. 235pp
58 Jeong, S. C. and Myrold, D. D. 2001. Population size and diver-sity of Frankia m soils under Ceanothus velutinus and Dou-glas-fir stands. Soil Biol. Biochem. 33:931-941   DOI   ScienceOn
59 Ochman, H. and Wilson, A. C. 1987. Evolution in bacteria: evi-dence for a universal substitution rate in cellular genomes. J. Mol. Evol. 26:74-86   DOI   PUBMED
60 Simonet, P., Navarro, E., Rouvier, C., Reddell, P., Zimpfer, J., Dommergues, Y., Bardin, R., Combarro, P., Hamelin, J., Domenach, A.-M., Gourbiere, F., Prin, Y., Dawson, J. O. and Normand, P. 1999. Co-evolution between Frankia popula-tions and host plants in the family Casuarinaceae and conse-quent patterns of global dispersal. Environ. Microbiol. 1:525-533   DOI   ScienceOn
61 Maggia, L. and Bousquet, J. 1994. Molecular phylogeny of the actinorhizal Hamamelidae and relationship with host promis-cuity towards Frankia. Mol. Ecol. 3:459-467   DOI
62 Swensen, S. M. 1996. The evolution of actinorhizal symbiosis: Evidence for multiple origins of the symbiotic association. Am. J. Bot. 83:1503-1512   DOI   ScienceOn
63 Baker, D. D. 1987. Relationships among pure cultured strains of Frankia based on host specificity. Physiol. Plant Pathol. 70:245-248   DOI
64 Huelsenbeck, J.P. and Rannala, B. 1997. Phylogenetic methods come of age: Testing hypotheses in an evolutionary context. Science 276:227-232   DOI   PUBMED   ScienceOn
65 Baker, D. D. and O'Keefe, D. 1984. A modified sucrose fraction-ation procedure for the isolation of frankiae from actinorhizal root nodules and soil samples. Plant Soil 78:23-28   DOI
66 Lechevalier, M. P. and Ruan, J.-S. 1984. Physiological and chem-ical diversity of Frankia spp. isolated from nodules of Compo-tonia peregrina (L.) Coult. and Ceanothus americanus L. Plant Soil 78:15-22   DOI
67 Benson, D. R. and Clawson, M. L. 2000. Evolution of the acti-norhizal plant symbiosis, In: Prokaryotic nitrogen fixation: A model system for the analysis of biological process, ed. by E.W Thiplett, 207-224 pp. Horizon Scientific Press, Wymondham, UK
68 Murry, M. A., Konopka, A. S., Pratt, S. D. and Vandergon, T. L. 1997. The use of PCR-based typing methods to assess the diversity of Frankia nodule endophytes of the actinorhizal shrub Ceanothus. Physiol. Plant 99:714-721   DOI   ScienceOn
69 Burleigh, S. and Torrey, J. G. 1990. Effectiveness of different Frankia cell types as inocula for the actinorhizal plant Casua-rina. Appl. Environ. Microbiol. 56:2565-2576
70 Callaham, D., Del Tredici, P. and Torrey, J. G. 1978. Isolation and cultivation in vitro of the actinomycete causing root nodula-tion in Comptonia. Science 199:899-902   DOI   PUBMED   ScienceOn
71 Miller, I. M. and Baker, D. D. 1986. Nodulation of actinorhizal plants by Frankia strains capable of both root hair infection and intercellular penetration. Protoplasma 131:82-91   DOI
72 Racette, S. and Torrey, J. G. 1989. Root nodule iniation in Gym-nostoma (Casuarinaceae) and Shepherdia (Elaeagnaceae) induced by Frankia strain HFPGpII. Can. J. Bot. 67:2873-2879   DOI
73 Simonet, P., Grosjean, M.-C., Misra, A. K., Nazaret, S., Courn-oyer, B. and Normand, P. 1991. Frankia genus-specific char-acterization by polymerase chain reaction. Appl. Environ. Microbiol. 57:3278-3286
74 Smolander, A., van Dijk, C. and Sundman, V. 1988. Survival of Frankia strains introduced into soil. Plant Soil 106:65-72   DOI
75 Wollum, A. G. II, Youngberg, C. T. and Chichester, F. W. 1968. Relation of previous timber stand age to nodulation of Cean-othus velutinus. For. Sci. 14:114-118
76 Hahn, D., Nickel, A. and Dawson, J. 1999. Assessing Frankia populations in plants and soil using molecular methods. FEMS Microbiol. Ecol. 29:215-227   DOI   ScienceOn
77 Myrold, D. D., Hilger, A. B. and Strauss, S. H. 1990. Detecting Frankia m soil using PCR. 429 p. In: Nitrogen Fixation: Achievements and Objectives, ed by P.M. Gresshoff, L.E. Roth, G. Stacey, and W.E. Newton. 429 pp. Chapman and Hall, New York