Characterization of an alkaline esterase from an enriched metagenomic library derived from an oil-spill area |
Baek, Seung Cheol
(Department of Pharmacy, and Research Institute of Life Pharmaceutical Sciences, Sunchon National University)
Jo, Jeong Min (Department of Agricultural Chemistry, Sunchon National University) Jeong, Soo-Mi (Department of Agricultural Chemistry, Sunchon National University) Lee, Jae Pil (Department of Pharmacy, and Research Institute of Life Pharmaceutical Sciences, Sunchon National University) Lee, Hyun Woo (Department of Pharmacy, and Research Institute of Life Pharmaceutical Sciences, Sunchon National University) Kim, Jungho (Department of Agricultural Chemistry, Sunchon National University) Kim, Hoon (Department of Pharmacy, and Research Institute of Life Pharmaceutical Sciences, Sunchon National University) |
1 | Adesioye FA, Makhalanyane TP, Vikram S, Sewell BT, Schubert WD, Cowan DA (2018) Structural characterization and directed evolution of a novel acetyl xylan esterase reveals thermostability determinants of the carbohydrate esterase 7 family. Appl Environ Microbiol 84: e02695-17 |
2 | Noby N, Saeed H, Embaby AM, Pavlidis IV, Hussein A (2018) Cloning, expression and characterization of cold active esterase (EstN7) from Bacillus cohnii strain N1: A novel member of family IV. Int J Biol Macromol 120: 1247-1255 DOI |
3 | Jayanath G, Mohandas SP, Kachiprath B, Solomon S, Sajeevan TP, Bright Singh IS, Philip R (2018) A novel solvent tolerant esterase of GDSGG motif subfamily from solar saltern through metagenomic approach: Recombinant expression and characterization. Int J Biol Macromol 119: 393-401 DOI |
4 | Lee HW, Jung WK, Kim YH, Ryu BH, Kim TD, Kim J, Kim H (2016) Characterization of a novel alkaline family VIII esterase with Senantiomer preference from a compost metagenomic library. J Microbiol Biotechnol 26: 315-325 DOI |
5 | Nakamura AM, Kadowaki MAS, Godoy A, Nascimento AS, Polikarpov I (2018) Low-resolution envelope, biophysical analysis and biochemical characterization of a short-chain specific and halotolerant carboxylesterase from Bacillus licheniformis. Int J Biol Macromol 120: 1893-1905 DOI |
6 | Dachuri VK, Lee C, Jang SH (2018) Organic solvent-tolerant esterase from Sphingomonas glacialis based on amino acid composition analysis: cloning and characterization of EstSP2. J Microbiol Biotechnol 28: 1502-1510 DOI |
7 | Kang HC, Kim JB, Lee HS, Cho KJ (2008) Cloning and characterization of an esterase from Xanthomonas oryzae pv. Oryzae. J Appl Biol Chem 51: 95-101 DOI |
8 | Selvin J, Kennedy J, Lejon DP, Kiran GS, Dobson AD (2012) Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans. Microb Cell Fact 11: 72 DOI |
9 | Ramnath L, Sithole B, Govinden R (2017) Classification of lipolytic enzymes and their biotechnological applications in the pulping industry. Can J Microbiol 63: 179-192 DOI |
10 | Malekabadi S, Badoei-Dalfard A, Karami Z (2018) Biochemical characterization of a novel cold-active, halophilic and organic solventtolerant lipase from B. licheniformis KM12 with potential application for biodiesel production. Int J Biol Macromol 109: 389-398 DOI |
11 | Lee DH, Moon SR, Park YH, Kim JH, Kim H, Parales RE, Kahng HY (2010) Pseudomonas taeanensis sp. nov., isolated from a crude oilcontaminated seashore. Int J Syst Evol Microbiol 60: 2719-2723 DOI |
12 | Sandoval G, Herrera-Lopez EJ (2018) Lipase, phospholipase, and esterase biosensors. Methods Mol Biol 1835: 391-425 DOI |
13 | Gudiukaite R, Gricajeva A (2017) Microbial lipolytic fusion enzymes: current state and future perspectives. World J Microbiol Biotechnol 33:216 DOI |
14 | Arpigny JL, Jaeger KE (1999) Bacterial lipolytic enzymes: classification and properties. Biochem J 343: 177-183 DOI |
15 | Charbonneau DM, Beauregard M (2013) Role of key salt bridges in thermostability of G. thermodenitrificans EstGtA2: distinctive patterns within the new bacterial lipolytic enzyme family XV. PLoS One 8:e76675 DOI |
16 | Schmeisser C, Steele H, Streit WR (2007) Metagenomics, biotechnology with non-culturable microbes. Appl Microbiol Biotechnol 75: 955-962 DOI |
17 | Lee DH, Moon SR, Park YH, Lee YS, Jung JS, Kim JH, Kim H, Kahng HY (2011) Gangjinia marincola gen. nov., sp. nov., a marine bacterium of the family Flavobacteriaceae. Int J Syst Evol Microbiol 61: 325-329 DOI |
18 | Kim HJ, Jeong YS, Jung WK, Kim SK, Lee HW, Kahng HY, Kim J, Kim H (2015) Characterization of novel family IV esterase and family I.3 lipase from an oil-polluted mud flat metagenome. Mol Biotechnol 57: 781-792 DOI |
19 | Kim YH, Kwon EJ, Kim SK, Jeong YS, Kim J, Yun HD, Kim H (2010) Molecular cloning and characterization of a novel family VIII alkaline esterase from a compost metagenomic library. Biochem Biophys Res Commun 393: 45-49 DOI |
20 | Kim HJ, Jung WK, Lee HW, Yoo W, Kim TD, Kim H (2015) Characterization of an alkaline family I.4 lipase from Bacillus sp. W130-35 isolated from a tidal mud flat with broad substrate specificity. J Microbiol Biotechnol 25: 2024-2033 DOI |
21 | Petersen TN, Brunak S, von Heijne G, Nielsen H (2011) SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786 DOI |
22 | Shin ES, Yang MJ, Jung KH, Kwon EJ, Jung JS, Park SK, Kim J, Yun HD, Kim H (2002) Influence of the transposition of the thermostabilizing domain of Clostridium thermocellum xylanase (XynX) on xylan binding and thermostabilization. Appl Environ Microbiol 68:3496-3501 DOI |
23 | Oh JM, Lee JP, Baek SC, Kim SG, Jo YD, Kim J, Kim H (2018) Characterization of two extracellular -glucosidases produced from the cellulolytic fungus Aspergillus sp. YDJ216 and their potential applications for the hydrolysis of flavone glycosides. Int J Biol Macromol 111: 595-603 DOI |
24 | Bradford MM (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal Biochem 72: 248-254 DOI |
25 | Laemmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227: 680-685 DOI |
26 | Shao H, Xu L, Yan Y (2013) Isolation and characterization of a thermostable esterase from a metagenomic library. J Ind Microbiol Biotechnol 40: 1211-1222 DOI |
27 | Kadri T, Rouissi T, Magdouli S, Brar SK, Hegde K, Khiari Z, Daghrir R, Lauzon JM (2018) Production and characterization of novel hydrocarbon degrading enzymes from Alcanivorax borkumensis. Int J Biol Macromol 112: 230-240 DOI |
28 | Zock J, Cantwell C, Swartling J, Hodges R, Pohl T, Sutton K, Rosteck P Jr, McGilvray D, Queener S (1994) The Bacillus subtilis pnbA gene encoding p-nitrobenzyl esterase: cloning, sequence and high-level expression in Escherichia coli. Gene 151: 37-43 DOI |
29 | Tao W, Lee MH, Wu J, Kim NH, Lee SW (2011) Isolation and characterization of a family VII esterase derived from alluvial soil metagenomic library. J Microbiol 49: 178-185 DOI |
30 | Ewis HE, Abdelal AT, Lu CD (2004) Molecular cloning and characterization of two thermostable carboxyl esterases from Geobacillus stearothermophilus. Gene 329: 187-195 DOI |
31 | Zhang S, Wu G, Liu Z, Shao Z, Liu Z (2014) Characterization of EstB, a novel cold-active and organic solvent-tolerant esterase from marine microorganism Alcanivorax dieselolei B-5(T). Extremophiles 18: 251-259 DOI |
32 | Sussman JL, Harel M, Frolow F, Oefner C, Goldman A, Toker L, Silman I (1991) Atomic structure of acetylcholinesterase from Torpedo californica: a prototypic acetylcholine-binding protein. Science 253: 872-879 DOI |
33 | Spiller B, Gershenson A, Arnold FH, Stevens RC (1999) A structural view of evolutionary divergence. Proc Natl Acad Sci USA 96: 12305-12310 DOI |
34 | Rashamuse K, Magomani V, Ronneburg T, Brady D (2009) A novel family VIII carboxylesterase derived from a leachate metagenome library exhibits promiscuous -lactamase activity on nitrocefin. Appl Microbiol Biotechnol 83: 491-500 DOI |
35 | Huo YY, Jian SL, Cheng H, Rong Z, Cui HL, Xu XW (2018) Two novel deep-sea sediment metagenome-derived esterases: residue 199 is the determinant of substrate specificity and preference. Microb Cell Fact 17:16 DOI |
36 | Bornscheuer UT (2002) Microbial carboxylesterase: classification, properties and application in biocatalysis. FEMS Microbiol Rev 26: 73-81 DOI |
37 | Perez D, Kovacic F, Wilhelm S, Jaeger KE, Garcia MT, Ventosa A, Mellado E (2012) Identification of amino acids involved in the hydrolytic activity of lipase LipBL from Marinobacter lipolyticus. Microbiology 158: 2192-2203 DOI |