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http://dx.doi.org/10.3839/jabc.2010.023

Photoperiodic Proteins in Plant Cells  

Hwang, Hee-Youn (Graduate School of Biotechnology and Plant Metabolism Research Center, Kyung Hee University)
Bhoo, Seong-Hee (Graduate School of Biotechnology and Plant Metabolism Research Center, Kyung Hee University)
Publication Information
Journal of Applied Biological Chemistry / v.53, no.3, 2010 , pp. 121-125 More about this Journal
Abstract
In the past 10 years, a lot of plant circadian rhythm researches have published in molecular biology and biochemistry. We discussed with published molecular studies of circadian clock and rhythmic genes in Arabidopsis, rice and algae. However past this studies are not sufficient to explain the whole rhythmic metabolism. Recently many researchers have concerned post-transcriptional, translational and post-translational modification of rhythmic proteins. From the view point of the high-throughput study, we could suggest the proteomic analysis with 2-DE gel electrophoresis and MS/MS techniques for the identification of modified proteins.
Keywords
plant; rhythm; protein; post-translational modification;
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1 Rensing L and Ruoff P (2002) Temperature effect on entrainment, phase shifting, and amplitude of circadian clocks and its molecular bases. Chronobiol Int 19, 807-864.   DOI   ScienceOn
2 Edwards KD, Anderson PE, Hall A, Salathia NS, Locke JCW et al. (2006) FLOWERING LOCUS C mediated natural variation in the high-temperature response of the Arabidopsis circadian clock. Plant Cell 18, 639-650.   DOI   ScienceOn
3 Ito S, Nakamichi N, Kiba T, Yamashino T, and Mizuno T. (2007) Rhythmic and light-inducible appearance of clock-associated pseudoresponse regulator protein PRR9 through programmed degradation in the dark in Arabidopsis thaliana. Plant Cell Physiol 48, 1644-1651.   DOI   ScienceOn
4 Matsuo T, Onai L, Okamoto K, Minagawa J, and Ishiura M. (2006) Real-time monitoring of chloroplast gene expression by luciferase reporter: evidence for nuclear regulation of chloroplast circadian period. Moll Cell Biol 26, 863-881.   DOI   ScienceOn
5 Somers DE (1999) The physiology and molecular bases of the plant circadian clock. Plant Physiol 121, 9-19.   DOI
6 Tsuji T, Hirota T, Takemori T, Komori M et al. (2007) Circadian proteomics of mouse retina. Proteomics 7, 3500-3508.   DOI   ScienceOn
7 Wagner V, Fiedler M, Markert C, Hippler M, and Mittag M (2004) Functional proteomics of circadian expressed proteins from Chlamydomonas reihardtii. FEBS Lett 559, 129-135   DOI   ScienceOn
8 Wagner V, Gessner G, and Mittag M (2005) Functional proteomics: a promising approach to find novel components of the circadian system. Chronobiol Int 22, 403-415.   DOI   ScienceOn
9 Mishra A, Cheng CH, Lee WC, and Tsai LL (2009) Proteomic changes in the hypothalamus and retroperitoneal fat from male F334 rats subjected to repeated light-dark shifts. Proteomics 9, 4012-4028.
10 Mittag M and Wagner V (2003) The circadian clock of the unicellular eukaryotic model organism Chlamydomonas reinhardtii. Biol Chem 384, 689-695.   DOI   ScienceOn
11 Mockler TC, Michael TP, Priest HD, Shen R et al. (2007) The DIURNAL project: DIURNAL and circadian expression profiling, model-based pattern matching, and promoter analysis. Cold Spring Harb Symp Quant Biol 72, 353-363.
12 Moller M, Sparre T, Bache N, Roepstorff P, and Vorum H (2007) Proteomic analysis of day-night variation in protein levels in the rat pineal gland. Proteomics 7, 2009-2018.   DOI   ScienceOn
13 Murakami M, Tago Y, Yamashino T, and Mizuno T (2007) Comparative overviews of clock-associated genes of Arabidopsis thaliana and Oryza sativa. Plant Cell Physiol 48, 110-121.
14 Nakajima M, Imai K, Ito H, Nishiwaki T et al. (2005) Reconstitution of circadian oscillation of cyanobacterial KaiC Phosphorylation in vitro. Science 308, 414-415.   DOI   ScienceOn
15 Onouchi H, Igeno MI, Perilleux C, Graves K, and Coupland G (2000) Mutagenesis of plants overexpressing of CONS TANS demonstrates novel interactions among Arabidopsis floweringtime genes. Plant Cell 12, 885-900   DOI
16 Portoles S and Mas P (2007) Altered oscillator fuction affects clock resonance and is responsible for the reduced day-length sesnsitivity of CKB4 overexpressing plants. Plant J 51, 966-977.   DOI   ScienceOn
17 Putteril J, Robson F, Lee K, Simon R, and Coupland G (1995) The CONSTANS gene of Arabidopsis promotes flowering and encodes a protein showing similarities to zinc finger transcription factors. Cell 80, 847-857.   DOI   ScienceOn
18 Salome PA and McClung CR (2004) The AArabidopsis thaliana clock. J Biol Rhythms 19, 425-435.   DOI   ScienceOn
19 Schaffer R, Landgraf J, Accerbi M, Simon V et al. (2001) Microarray analysis of diurnal and circadian-regulated genes in Arabidopsis. Plant Cell 13, 113-123.   DOI
20 Harmer SL (2009) The circadian system in higher plants. Annu Rev Plant Biol 60, 357-377.   DOI   ScienceOn
21 Harmon FG, Imaizumi T, and Kay SA (2005) The plant circadian clock: review of a clockwork Arabidopsis. In Endogenous Plant Rhythms. Edited by Hall A., McWatters H.G Oxford Blackwell. 21, 1-23.
22 Hayama R, Yokoi S, Tamaki S, Yano M, and Shimamoto K (2003) Adaptation of photoperiodic control pathways produces shortday flowering in rice. Nature 422, 719-722.   DOI   ScienceOn
23 Izawa T (2007) Adaptation of flowering-time by natural and artificial selection in Arabidopsis and rice. J Exp Bot 58, 3091-3097.   DOI   ScienceOn
24 Izawa T, Oikawa T, Sugiyama N, Tanisaka T, Yano M. and Shimamoto K (2010) Phytochrome mediates the external light signal to repress FT orthologs in photoperiodic flowering of rice. Gens & Dev 16, 2006-2020.
25 Karp NA and Lilley KS (2007) Identification of clock genes using difference gel electrophoresis. Methods Mol Biol 362, 265-287.   DOI   ScienceOn
26 Kiba T, Henriques R, Sakakibara H, and Chua NH (2007) Targeted degradation of PSEUDO-RESPONSE REGULATOR 5 by an SCFZTL complex regulates clock function and photomotphogenesis in Arabidopsis thaliana. Plant Cell 19, 2516-2530.   DOI   ScienceOn
27 Kim WY, Fujiwara S, Suh SS, Kim J et al. (2007) ZEITLUPE is a circadian photoreceptor stabilized by GIGANTEA in blue light. Nature 449, 356-360.   DOI   ScienceOn
28 Kobayashi Y and Weigel D (2010) Move on up, it's time for change-mobile signals controlling photoperiod-dependent flowering. Genes & Dev 21, 2371-2384.
29 Kojima S, Takahashi Y, Kobayashi Y, Monna L, Sasaki T, Araki T, and Yano M (2002) Hd3a, a rice ortholog of the Arabidopsis FT gene, promotes transition to flowering downstream of Hdl under short-day conditions. Plant Cell Physiol 43, 1096-1105.   DOI   ScienceOn
30 McClung CR (2006) Plant circadian rhythms. Plant Cell 18, 792-803.   DOI   ScienceOn
31 Breton G and Kay SA (2006) Circadian rhythms lit up in Chlamydomonas. Genome Biol 7, 215.   DOI
32 Bruce VG (1970) The biological clock in Chlamydomonas reinhardtii. J Protozool 17, 328-334.   DOI
33 Chen M, Chory J, and Fankhauser C (2004) Light signal transduction in higher plants. Annu Rev Gent 38, 87-117.   DOI   ScienceOn
34 Daniel X, Sugano S, and Tobin EM (2004) CK2 phosphorylation of CCA1 is necessary for its circadian oscillator function in Arabidopsis. Proc Natl Acad Sci USA 101, 3292.3297.   DOI   ScienceOn
35 Doi K, Izawa T, Fuse T, Yamanouchi U, Kubo T, Shimatani Z, Yano M, and Yoshimura A (2004) Ehdl, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Fdl. Genes & Dev 18, 926-936.   DOI   ScienceOn
36 Farre EM and Kay SA (2007) PRR7 protein levels are regulated by light and the circadian clocks in Arabidopsis. Plant J 52, 548-60.   DOI   ScienceOn
37 Fujiwara S, Wang L, Han L, Suh SS et al. (2008) Posttranslational regulation of the Arabidopsis circadian clock through selective proteolysis and phosphorylation of pseudoresponse regulator proteins. J Biol Chem 283, 23073-23083.   DOI   ScienceOn
38 Gallego M and Virshup DM (2007) Post-translational modifications regulate the ticking of the circadian clock. Nat Rev Mol Cell Biol 8, 139-148.   DOI   ScienceOn
39 Gardner MJ, Hubbard KE, Hotta CT, Dodd AN, and Webb AAR (2006) How plants tell the time. Biochem J 397, 15-24.   DOI   ScienceOn
40 Han L, Mason M, Risseeuw EP, Crosby WL, and Somers DE (2004) Formation of an SCF (ZTL) complex is required for proper regulation of circadian timing. Plant J 40, 291-301.   DOI   ScienceOn
41 Harmer SL, Hogenesch JB, Straume M, Chang HS et al. (2000) Orchestrated transcription of key pathways in Arabidopsis by the circadian clock. Science 290, 2110-2113.   DOI   ScienceOn