High-Throughput Screening Technique for Microbiome using MALDI-TOF Mass Spectrometry: A Review |
Mojumdar, Abhik
(Biochemical analysis team, center for research equipment, Korea Basic Science Institute (KBSI), Ochang Center)
Yoo, Hee-Jin (Biochemical analysis team, center for research equipment, Korea Basic Science Institute (KBSI), Ochang Center) Kim, Duck-Hyun (Biochemical analysis team, center for research equipment, Korea Basic Science Institute (KBSI), Ochang Center) Cho, Kun (Biochemical analysis team, center for research equipment, Korea Basic Science Institute (KBSI), Ochang Center) |
1 | Nosalova, L.; Malinicova, L.; Kiskova, J.; Timkova, I.; Sedlakova-Kadukova, J.; Pristas, P. Geomicrobiology Journal 2021, 38, 415. DOI: 10.1080/01490451.2021.1871685 DOI |
2 | Garcia Lara, B.; Wrobel, K.; Corrales Escobosa, A.R.; Serrano Torres, O.; Enciso Donis, I.; Wrobel, K. Folia Microbiologica 2021, 66, 355. DOI: 10.1007/s12223-020-00848-8 DOI |
3 | Silva-Jimenez, H.; Araujo-Palomares, C.L.; MaciasZamora, J.V.; Ramirez-Alvarez, N.; Garcia-Lara, B.; Corrales-Escobosa, A.R. Journal of the Mexican Chemical Society 2018, 62, 214. DOI: 10.29356/jmcs.v62i2.411 DOI |
4 | Furlan, J.P.R.; Pitondo-Silva, A.; Braz, V.S.; Gallo, I.F.L.; Stehling, E.G. World Journal of Microbiology and Biotechnology 2019, 35, 1. DOI: 10.1007/s11274-019-2614-0 DOI |
5 | Junior, P.S.P.C.; Cardoso, F.P.; Martins, A.D.; Buttros, V.H.T.; Pasqual, M.; Dias, D.R.; Schwan, R.F.; Doria, J. Microbiological research 2020, 241, 126585. DOI: 10.1016/j.micres.2020.126585 DOI |
6 | Franco-Duarte, R., Cernakova, L., Kadam, S., S. Kaushik, K., Salehi, B., Bevilacqua, A., Corbo, M.R., Antolak, H., Dybka-Stepien, K., Leszczewicz, M., Relison Tintino, S. Microorganisms 2019, 7, 130. DOI: 10.3390/microorganisms7050130 DOI |
7 | Sauer, S., Kliem, M. Nature Reviews Microbiology, 2010, 8, 74. DOI: 10.1038/nrmicro2243 DOI |
8 | Everley, R.A.; Mott, T.M.; Wyatt, S.A.; Toney, D.M.; Croley, T.R. Journal of the American Society for Mass Spectrometry 2008, 19, 1621. DOI: 10.1016/j.jasms.2008.07.003 DOI |
9 | Wang, Y.; Zhou, Q.; Li, B.; Liu, B.; Wu, G.; Ibrahim, M.; Xie, G.; Li, H.; Sun, G. BMC microbiology 2012, 12, 1. DOI: 10.1186/1471-2180-12-182 DOI |
10 | Ekstrom, S.; Onnerfjord, P.; Nilsson, J.; Bengtsson, M.; Laurell, T.; Marko-Varga, G. Analytical chemistry 2000, 72, 286. DOI: 10.1021/ac990731l DOI |
11 | Sawada, H.; Horita, H.; Misawa, T.; Takikawa, Y. Journal of general plant pathology 2019, 85, 413. DOI: 10.1007/s10327-019-00869-3 DOI |
12 | Pinar-Mendez, A.; Fernandez, S.; Baquero, D.; Vilaro, C.; Galofre, B.; Gonzalez, S.; Rodrigo-Torres, L.; Arahal, D.R.; Macian, M.C.; Ruvira, M.A. Water Research 2021, 203, 117543. DOI: 10.1016/j.watres.2021.117543 DOI |
13 | Fenselau, C.C. Journal of the American Society for Mass Spectrometry 2013, 24, 1161. DOI: 10.1007/s13361-013-0660-7 DOI |
14 | Biswas, S.; Rolain, J.-M. Journal of microbiological methods 2013, 92, 14. DOI: 10.1016/j.mimet.2012.10.014 DOI |
15 | Singhal, N.; Kumar, M.; Kanaujia, P.K.; Virdi, J.S. Frontiers in microbiology 2015, 6, 791. DOI: 10.3389/fmicb.2015.00791 DOI |
16 | Muthuri, C.; Nyambura, N.; Njeri, V.; Tani, A.; Wangari, M. Afr. J. Microbiol. Res 2012, 6, 6414. DOI: 10.5897/AJMR12.1112 DOI |
17 | Pramanik, K.; Mitra, S.; Sarkar, A.; Soren, T.; Maiti, T.K. Environmental Science and Pollution Research 2017, 24, 24419. DOI: 10.1007/s11356-017-0033-z DOI |
18 | Costerousse, B.; Schonholzer-Mauclaire, L.; Frossard, E.; Thonar, C. Applied and environmental microbiology 2018, 84, e01715. DOI: 10.1128/AEM.01715-17 DOI |
19 | Sarkar, A.; Pramanik, K.; Mitra, S.; Soren, T.; Maiti, T.K. Journal of plant physiology 2018, 231, 434. DOI: 10.1016/j.jplph.2018.10.010 DOI |
20 | Kajiwara, H. Journal of microbiological methods 2016, 120, 1. DOI: 10.1016/j.mimet.2015.08.014 DOI |
21 | Wang, Z.; Russon, L.; Li, L.; Roser, D.C.; Long, S.R. Rapid Communications in Mass Spectrometry 1998, 12, 456. DOI: 10.1002/(SICI)1097-0231(19980430)12:8<456::AID-RCM177>3.0.CO;2-U DOI |
22 | Ruelle, V.; Moualij, B.E.; Zorzi, W.; Ledent, P.; Pauw, E.D. Rapid Communications in Mass Spectrometry 2004, 18, 2013. DOI: 10.1002/rcm.1584 DOI |
23 | Ashfaq, M.Y.; Da'na, D.A.; Al-Ghouti, M.A. Journal of Environmental Management 2022, 305, 114359. DOI: 10.1016/j.jenvman.2021.114359 DOI |
24 | Havlicek, V.; Lemr, K.; Schug, K.A. Analytical chemistry 2013, 85, 790. DOI: 10.1021/ac3031866 DOI |
25 | Dingle, T.C.; Butler-Wu, S.M. Clinics in laboratory medicine 2013, 33, 589. DOI: 10.1016/j.cll.2013.03.001 DOI |
26 | De Carolis, E.; Vella, A.; Vaccaro, L.; Torelli, R.; Spanu, T.; Fiori, B.; Posteraro, B.; Sanguinetti, M. The Journal of Infection in Developing Countries 2014, 8, 1081. DOI: 10.3855/jidc.3623 DOI |
27 | Zeng, Y.; Wu, N.; Madsen, A.M.; Chen, X.; Gardiner, A.T.; Koblizek, M. Frontiers in microbiology 2021, 11, 606612. DOI: 10.3389/fmicb.2020.606612 DOI |
28 | Zhang, D.; Palmer, J.; Teh, K.H.; Flint, S. Lwt 2020, 134, 110165. DOI: 10.1016/j.lwt.2020.110165 DOI |
29 | Ge, M.; Li, B.; Wang, L.; Tao, Z.; Mao, S.; Wang, Y.; Xie, G.; Sun, G. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 2014, 133, 730. DOI: 10.1016/j.saa.2014.06.056 DOI |
30 | Illikoud, N.; Rossero, A.; Chauvet, R.; Courcoux, P.; Pilet, M.-F.; Charrier, T.; Jaffres, E.; Zagorec, M. Food microbiology 2019, 81, 22. DOI: 10.1016/j.fm.2018.01.015 DOI |
31 | Niestepski, S.; Harnisz, M.; Korzeniewska, E.; Osinska, A. 2019. Isolation of anaerobic bacteria of the Bacteroides fragilis group from environmental samples. In E3S Web of Conferences: EDP Sciences. 00058. DOI: 10.1051/e3sconf/201910000058 DOI |
32 | Vicenzi, F.J.; Pillonetto, M.; Souza, H.A.P.H.d.M.d.; Palmeiro, J.K.; Riedi, C.A.; Rosario-Filho, N.A.; DallaCosta, L.M. Memorias do Instituto Oswaldo Cruz 2016, 111, 37. DOI: 10.1590/0074-02760150314 DOI |
33 | Fehlberg, L.C.C.; Andrade, L.H.S.; Assis, D.M.; Pereira, R.H.V.; Gales, A.C.; Marques, E.A. Diagnostic microbiology and infectious disease 2013, 77, 126. DOI: 10.1016/j.diagmicrobio.2013.06.011 DOI |
34 | Alsayegh, S.Y.; Al Disi, Z.; Al-Ghouti, M.A.; Zouari, N. Biotechnology Reports 2021, 31, e00660. DOI: 10.1016/j.btre.2021.e00660 DOI |
35 | Sandrin, T.R.; Goldstein, J.E.; Schumaker, S. Mass spectrometry reviews 2013, 32, 188. DOI: 10.1002/mas.21359 DOI |
36 | Sala-Comorera, L.; Caudet-Segarra, L.; Galofre, B.; Lucena, F.; Blanch, A.R.; Garcia-Aljaro, C. International Journal of Food Microbiology 2020, 334, 108850. DOI: 10.1016/j.ijfoodmicro.2020.108850 DOI |
37 | Holland, R.; Wilkes, J.; Rafii, F.; Sutherland, J.; Persons, C.; Voorhees, K.; Lay Jr, J. Rapid Communications in Mass Spectrometry 1996, 10, 1227. DOI: 10.1002/(SICI)1097-0231(19960731)10:10<1227::AID-RCM659>3.0.CO;2-6 DOI |
38 | Kostrzewa, M.; Sparbier, K.; Maier, T.; Schubert, S. PROTEOMICS-Clinical Applications 2013, 7, 767. DOI: 10.1002/prca.201300042 DOI |
39 | Krishnamurthy, T.; Rajamani, U.; Ross, P. Rapid Communications in Mass Spectrometry 1996, 10, 883. DOI: 10.1002/(SICI)1097-0231(19960610)10:8<883::AID-RCM594>3.0.CO;2-V DOI |
40 | Martiny, D.; Busson, L.; Wybo, I.; El Haj, R.A.; Dediste, A.; Vandenberg, O. Journal of clinical microbiology 2012, 50, 1313. DOI: 10.1128/JCM.05971-11 DOI |
41 | Dieckmann, R.; Graeber, I.; Kaesler, I.; Szewzyk, U.; Von Dohren, H. Applied microbiology and biotechnology 2005, 67, 539. DOI: 10.1007/s00253-004-1812-2 DOI |
42 | Powthong, P.; Suntornthiticharoen, P. Bulgarian Journal of Agricultural Science 2018, 24, 623. |
43 | Donohue, M.J.; Best, J.M.; Smallwood, A.W.; Kostich, M.; Rodgers, M.; Shoemaker, J.A. Analytical chemistry 2007, 79, 1939. DOI: 10.1021/ac0611420 DOI |
44 | Malinicova, L.; Nosal'ova, L.; Timkova, I.; Pristas, P.; Sedlakova-Kadukova, J. Inzynieria Mineralna 2020. . DOI: 10.29227/IM-2020-01-47 DOI |
45 | Vidali, M. Pure and applied chemistry 2001, 73, 1163. DOI: 10.1351/pac200173071163 DOI |
46 | Silva, N.M.; de Oliveira, A.M.S.A.; Pegorin, S.; Giusti, C.E.; Ferrari, V.B.; Barbosa, D.; Martins, L.F.; Morais, C.; Setubal, J.C.; Vasconcellos, S.P. PLoS One 2019, 14, e0215396. DOI: 10.1371/journal.pone.0215396 DOI |
47 | Lovecka, P.; Pacovska, I.; Stursa, P.; Vrchotova, B.; Kochankova, L.; Demnerova, K. New biotechnology 2015, 32, 26. DOI: 10.1016/j.nbt.2014.07.003 DOI |