1 |
Arvidsson S, Perez-Rodriguez P and Mueller-Roeber B (2011) A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytol 191, 895-907
DOI
|
2 |
He Z, Zeng J, Ren Y et al (2017) OsGIF1 positively regulates the sizes of stems, leaves and grains in rice. Front Plant Sci 8, 1730
DOI
|
3 |
Tang Y, Liu H, Guo S et al (2018) OsmiR396d miRNA affects gibberellin and brassinosteroid signaling to regulate plant architecture. Plant Physiol 176, 946-959
DOI
|
4 |
Tsukaya H (2006) Mechanism of leaf-shape determination. Ann Rev of Plant Biol 57, 477-496
DOI
|
5 |
Gonzalez N, De Bodt S, Sulpice R et al (2010) Increased leaf size, different means to an end. Plant Physiol 153, 1261-1279
DOI
|
6 |
Zurcher E and Muller B (2016) Cytokinin synthesis, signaling and function-advances and new insights. Int Rev Cell Mol Bio 324, 1-38
DOI
|
7 |
Kim JH, Kim J, Jun SE et al (2018) ORESARA15, a PLATZ transcription factor, mediates leaf growth and senescence in Arabidopsis. New Phytol 220, 609-623
DOI
|
8 |
Rodriguez RE, Ercoli MF, Debernardi J et al (2015) MicroRNA miR396 regulates the switch between stem cells and transit-amplifying cells in Arabidopsis roots. Plant Cell 27, 3354-3366
DOI
|
9 |
Beltramino M, Ercoli MF, Debernardi JM et al (2018) Robust increase of leaf size by Arabidopsis thaliana GRF3-like transcription factors under different growth conditions. Sci Rep 8, 13447
DOI
|
10 |
Kanei M, Horiguchi G and Tsukaya H (2012) Stable establishment of cotyledon identity during embryogenesis in Arabidopsis by ANGUSTIFOLIA3 and HANABA TARANU. Development 139, 2436-2446
DOI
|
11 |
Zhao Y, Medrano L, Ohashi K et al (2004) HANABA TARANU is a GATA transcription factor that regulates shoot apical meristem and flower development in Arabidopsis. Plant Cell 16, 2586-2600
DOI
|
12 |
Bazin J, Khan GA, Combier J et al (2013) miR396 affects mycorrhization and root meristem activity in the legume Medicago truncatula. Plant J 74, 920-934
DOI
|
13 |
Lee BH, Wynn AN, Franks RG, Hwang Y, Lim J and Kim JH (2014) The Arabidopsis thaliana GRF- INTERACTING FACTOR gene family plays an essential role in control of male and female reproductive development. Dev Biol 386, 12-24
DOI
|
14 |
White DWR (2006) PEAPOD regulates lamina size and curvature in Arabidopsis. Proc Natl Acad Sci U S A 103, 13238-13243
DOI
|
15 |
Sarvepalli K, Gupta MD, Challa KR and Nath U (2019) Molecular cartography of leaf development - role of transcription factors. Curr Opin Plant Biol 47, 22-31
DOI
|
16 |
Kim JH and Lee BH (2006) GROWTH-REGULATING FACTOR4 of Arabidopsis thaliana is required for development of leaves, cotyledons, and shoot apical meristem. J Plant Biol 49, 463-468
DOI
|
17 |
Lee BH, Ko JH, Lee S, Lee Y, Pak JH and Kim JH (2009) The Arabidopsis GRF-INTERACTING FACTOR gene family performs an overlapping function in determining organ size as well as multiple developmental properties. Plant Physiol 151, 655-668
DOI
|
18 |
Wang L, Gu X, Xu D et al (2011) miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis. J Exp Bot 62, 761-773
DOI
|
19 |
Hewezi T, Maier TR, Nettleton D and Baum TJ (2012) The Arabidopsis microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection. Plant Physiol 159, 321-335
DOI
|
20 |
Yang F, Liang G, Liu D and Yu D (2009) Arabidopsis miR396 mediates the development of leaves and flowers in transgenic tobacco. J Plant Biol 52, 475-481
DOI
|
21 |
Gomez MS, Ferreyra MLF, Sheridan M and Casati P (2018) Arabidopsis E2Fc is required for the DNA damage response under UV-B radiation epistatically over the microRNA396 and independently of E2Fe. Plant J 97, 749-764
DOI
|
22 |
Liu J, Rice JH, Chen N, Baum TJ and Hewezi T (2014) Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS One 9, e98477
DOI
|
23 |
Soto-Suarez M, Baldrich P, Weigel D, Rubio-Somoza I and Segundo BS (2017) The Arabidopsis miR396 mediates pathogen-associated molecular pattern-triggered immune responses against fungal pathogens. Sci Rep 7, 44898
DOI
|
24 |
Casadevall R, Rodriguez RE, Debernardi JM, Palatnik JF and Casati P (2013) Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell 25, 3570-3583
DOI
|
25 |
Fina JP, Casadevall R, AbdElgawad H et al (2017) UV-B inhibits leaf growth through changes in Growth Regulating Factors and gibberellin levels. Plant Physiol 174, 1110-1126
DOI
|
26 |
Bowman JL, Kohchi T, Yamato K et al (2017) Insights into land plant evolution garnered from the Marchantia polymorpha genome. Cell 171, 287-304
DOI
|
27 |
Delwiche CF and Cooper ED (2015) The evolutionary origin of a terrestrial flora. Curr Biol 25, R899-R910
DOI
|
28 |
Timme RE and Delwiche CF (2010) Uncovering the evolutionary origin of plant molecular processes: comparison of Coleochaete (Coleochaetales) and Spirogyra (Zygnematales) transcriptomes. BMC Plant Biol 10, 96
DOI
|
29 |
Liu J, Hua W, Yang HL et al (2012) The BnGRF2 gene (GRF2-like gene from Brassica napus) enhances seed oil production through regulating cell number and plant photosynthesis. J Exp Bot 63, 3727-3740
DOI
|
30 |
Baucher M, Moussawi J, Vandeputte OM et al (2013) A role for the miR396/GRF network in specification of organ type during flower development, as supported by ectopic expression of Populus trichocarpa miR396c in transgenic tobacco. Plant Biol 15, 892-898
DOI
|
31 |
Hong JK, Oh S-W, Kim JH, Lee SB, Suh EJ and Lee Y-H (2017) Overexpression of Brassica rapa GROWTHREGULATING FACTOR genes in Arabidosis thaliana increases organ growth by enhancing cell proliferation. J Plant Biotechnol 44, 271-286
DOI
|
32 |
Hong JK, Suh EJ, Lee SB, Yoon H-J and Lee Y-H (2018) Effects of overexpression of Brasscia rapa GROWTHREGUALTING FACTOR genes on B. napus organ size. Kor J Breed Sci 50, 378-386 (in Korean)
DOI
|
33 |
Ferjani A, Yano S, Horiguchi G and Tsukaya H (2007) Analysis of leaf development in fugu mutants of Arabidopsis reveals three compensation modes that modulate cell expansion in determinate organs. Plant Physiol 144, 988-999
DOI
|
34 |
Donnelly PM, Bonetta D, Tsukaya H, Dengler RE and Dengler NG (1999) Cell cycling and cell enlargement in developing leaves of Arabidopsis. Dev Biol 215, 407-419
DOI
|
35 |
Li X, Liu W, Zhu Y et al (2019) BIGGER ORGANS and ELEPHANT EAR-LIKE LEAF1 control organ size and floral organ internal asymmetry in pea. J Exp Bot 70, 179-191
DOI
|
36 |
Han S-K, Wu M-F, Cui S and Wagner D (2015) Roles and activities of chromatin remodeling ATPases in plants. Plant J 83, 62-77
DOI
|
37 |
Koster MJ, Snel B and Timmers HT (2015) Genesis of chromatin and transcription dynamics in the origin of species. Cell 161, 724-736
DOI
|
38 |
Vercruyssen L, Tognetti VB, Gonzalez N et al (2015) GROWTH REGULATING FACTOR5 stimulates Arabidopsis chloroplast division, photosynthesis, and leaf longevity Plant Physiol 167, 817-832
DOI
|
39 |
Ichihashi Y, Kawade K, Usami T, Horiguchi G, Takahashi T and Tsukaya H (2011) Key proliferative activity in the junction between the leaf blade and leaf petiole of Arabidopsis. Plant Physiol 157, 1151-1162
DOI
|
40 |
Lee BH and Kim JH (2014) Spatio-temporal distribution patterns of GRF-INTERACTING FACTOR expression and leaf size control. Plant Signal Behav 9, e29697
DOI
|
41 |
Riechmann JL, Heard J, Martin G et al (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290, 2105-2110
DOI
|
42 |
Guo A, He K, Liu D et al (2005) DATF: A Database of Arabidopsis transcription factors. Bioinformatics 21, 2568-2569
DOI
|
43 |
Riano-Pachon DM, Ruzicic S, Dreyer I and Mueller-Roeber B (2007) PlnTFDB: an integrative plant transcription factor database. BMC Bioinformatics 8, 42
DOI
|
44 |
Mitsuda N and Ohme-Takagi M (2009) Functional analysis of transcription factors in Arabidopsis. Plant Cell Physiol 50, 1232-1248
DOI
|
45 |
Gonzalez D (2015) Plant transcription factors: evolutionary, structural and functional aspects. 1st ed., Academic Press.
|
46 |
van der Knaap E, Kim JH and Kende H (2000) A novel gibberellin-induced gene from rice and its potential regulatory role in stem growth. Plant Physiol 122, 695-704
DOI
|
47 |
Kim JH, Choi D and Kende H (2003) The AtGRF family of putative transcription factors is involved in leaf and cotyledon growth in Arabidopsis. Plant J 36, 94-104
DOI
|
48 |
Kim JH and Kende H (2004) A transcriptional coactivator, AtGIF1, is involved in regulating leaf growth and morphology in Arabidopsis. Proc Natl Acad Sci U S A 101, 13374-13379
DOI
|
49 |
Choi D, Kim JH and Kende H (2004) Whole genome analysis of the OsGRF gene family encoding plant-specific putative transcription activators in rice (Oryza sativa L). Plant Cell Physiol 45, 897-904
DOI
|
50 |
Gupta MD and Nath U (2015) Divergence in patterns of leaf growth polarity is associated with the expression divergence of miR396. Plant Cell 27, 2785-2799
|
51 |
Rodriguez RE, Ercoli MF, Debernadi JM and Palatnik J (2016) Growth-regulating factors, a transcription factor family regulating more than just plant growth. In: Gonzalez DH, ed. Plant Transcription Factors. Elsevier, The Netherlands; Chapter 17, pp. 269-280
|
52 |
Horiguchi G, Kim G and Tsukaya H (2005) The transcription factor AtGRF5 and the transcription coactivator AN3 regulate cell proliferation in leaf primordia of Arabidopsis thaliana. Plant J 43, 68-78
DOI
|
53 |
Kim JH and Tsukaya H (2015) Regulation of plant growth and development by the GROWTH-REGULATING FACTOR and GRF-INTERACTING FACTOR duo. J Exp Bot 66, 6093-6107
DOI
|
54 |
Omidbakhshfard MA, Proost S, Fujikura U and Mueller-Roeber B (2015) Growth-Regulating Factors (GRFs): A small transcription factor family with important functions in plant biology. Mol Plant 8, 998-1010
DOI
|
55 |
Liu D, Song Y, Chen Z and Yu D (2009) Ectopic expression of miR396 suppresses GRF target gene expression and alters leaf growth in Arabidopsis. Physiol Plant 136, 223-236
DOI
|
56 |
Kuijt SJ, Greco R, Agalou A et al (2014) Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol 164, 1952-1966
DOI
|
57 |
Rodriguez RE, Mecchia MA, Debernardi JM, Schommer C, Weigel D and Palatnik JF (2010) Control of cell proliferation in Arabidopsis thaliana by microRNA miR396. Development 137, 103-112
DOI
|
58 |
Osnato M, Stile MR, Wang Y et al (2010) Cross talk between the KNOX and ethylene pathways is mediated by intron-binding transcription factors in barley. Plant Physiol 154, 1616-1632
DOI
|
59 |
Kim JS, Mizoi J, Kidokoro S et al (2012) Arabidopsis GROWTH-REGULATING FACTOR7 functions as a transcriptional repressor of abscisic acid- and osmotic stress-responsive genes, including DREB2A. Plant Cell 24, 3393-3405
DOI
|
60 |
Liu H, Guo S, Xu Y et al (2014) OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol 165, 160-174
DOI
|
61 |
Wu L, Zhang D, Xue M, Qian J, He Y and Wang S (2014) Overexpression of the maize GRF10, an endogenous truncated GRF protein, leads to reduction in leaf size and plant height. J Integr Plant Biol 56, 1053-1063
DOI
|
62 |
Debernardi JM, Mecchia MA, Vercruyssen L et al (2014) Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Plant J 79, 413-426
DOI
|
63 |
Liang G, He H, Li Y, Wang F and Yu D (2014) Molecular mechanism of microRNA396 mediating pistil development in Arabidopsis. Plant Physiol 164, 249-258
DOI
|
64 |
Thaete C, Brett D, Monaghan P et al (1999) Functional domains of the SYT and SYT-SSX synovial sarcoma translocation proteins and co-localization with the SNF protein BRM in the nucleus. Human Mol Gen 8, 585-591
DOI
|
65 |
Vercruyssen L, Verkest A, Gonzalez N et al (2014) ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell 26, 210-229
DOI
|
66 |
Nelissen H, Eeckhout D, Demuynck K et al (2015) Dynamic changes in ANGUSTIFOLIA3 complex composition reveal a growth regulatory mechanism in the maize leaf. Plant Cell 27, 1605-1619
DOI
|
67 |
Zhang D, Sun W, Singh R et al (2018) GRF-interacting factor1 (gif1) regulates shoot architecture and meristem determinacy in maize. Plant Cell 30, 360-374
DOI
|
68 |
de Bruijn DR and van Kessel GA (2006) Common origin of the human synovial sarcoma associated SS18 and SS18L1 gene loci. Cytogenet Genom Res 112, 222-226
DOI
|
69 |
Gao F, Wang K, Liu Y et al (2016) Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants 2, 15196
DOI
|
70 |
Omidbakhshfard MA, Fujikura U, Olas JJ, Xue GP, Balazadeh S and Mueller-Roeber B (2018) GROWTHREGULATING FACTOR 9 negatively regulates Arabidopsis leaf growth by controlling ORG3 and restricting cell proliferation in leaf primordia. PLoS Genet 14, e1007484
DOI
|
71 |
Ercoli MF, Ferela A, Debernardi JM, Perrone AP, Rodriguez RE and Palatnik JF (2018) GIF transcriptional coregulators control root meristem homeostasis. Plant Cell 30, 347-359
DOI
|
72 |
Kawade K, Horiguchi G, Usami T, Hirai MY and Tsukaya H (2013) ANGUSTIFOLIA3 signaling coordinates proliferation between clonally distinct cells in leaves. Curr Biol 23, 788-792
DOI
|
73 |
Nagai M, Tanaka S, Tsuda M et al (2001) Analysis of transforming activity of human synovial sarcomaassociated chimeric protein SYT-SSX1 bound to chromatin remodeling factor hBRM/hSNF2 alpha. Proc Natl Acad Sci U S A 98, 3843-3848
DOI
|
74 |
Perani M, Ingram CJ, Cooper CS, Garrett MD and Goodwin GH (2003) Conserved SNH domain of the proto-oncoprotein SYT interacts with components of the human chromatin remodelling complexes, while the QPGY repeat domain forms homo-oligomers. Oncogene 22, 8156-8167
DOI
|
75 |
Middeljans E, Wan X, Jansen PW and Sharma V (2012) SS18 together with animal-specific factors defines human BAF-type SWI/SNF complexes. PLoS One 7, e33834
DOI
|
76 |
Shimano S, Hibara K-I, Furuya T, Arimura S-I, Tsukaya H and Itoh J-I (2018) Conserved functional control, but distinct regulation of cell proliferation in rice and Arabidopsis leaves revealed by comparative analysis of GRF-INTERACTING FACTOR1 orthologs. Development 145, dev159624
DOI
|
77 |
Lee S-J, Lee BH, Jung J-H, Park SK, Song JT and Kim JH (2018) GROWTH-REGULATING FACTOR and GRFINTERACTING FACTOR specify meristematic cells of gynoecia and anthers. Plant Physiol 176, 717-729
DOI
|
78 |
Schommer C, Debernardi JM, Bresso EG, Rodriguez RE and Palatnik JF (2014) Repression of cell proliferation by miR319-regulated TCP4. Mol Plant 7, 1533-1544
DOI
|
79 |
Bresso EG, Chorostecki U, Rodriguez RE, Palatnik JF and Schommer C (2017) Spatial control of gene expression by miR319-regulated TCP transcription factors in leaf development. Plant Physiol 176, 1694-1708
DOI
|
80 |
Pajoro A, Madrigal P, Muino JM et al (2014) Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development. Genome Biol 15, R41
DOI
|
81 |
Duan P, Ni S, Wang B et al (2016) Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice. Nat Plants 2, 1
|
82 |
Sun Q, Zhou DX (2008) Rice jmjC domain-containing gene JMJ706 encodes H3K9 demethylase required for floral organ development. Proc Natl Acad Sci U S A 105, 13679-13684
DOI
|
83 |
Pu C, Ma Y, Wang J et al (2012) Crinkly4 receptor-like kinase is required to maintain the interlocking of the palea and lemma and fertility in rice, by promoting epidermal cell differentiation. Plant J 70, 940-953
DOI
|
84 |
Hu J, Wang Y, Fang Y et al (2015) A rare allele of GS2 enhances grain size and grain yield in rice. Mol Plant 8, 1455-1465
DOI
|
85 |
Che R, Tong H, Shi B et al (2016) Control of grain size and rice yield by GL2-mediated brassinosteroid responses. Nat Plants 2, 15195
DOI
|
86 |
Li S, Gao F, Xie K et al (2016) The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice. Plant Biotech J 14, 2134-2146
DOI
|
87 |
Sun P, Zhang W, Wang Y et al (2016) OsGRF4 controls grain shape, panicle length and seed shattering in rice. J Integr Plant Biol 58, 836-847
DOI
|
88 |
van Daele I, Gonzalez N, Vercauteren I et al (2012) A comparative study of seed yield parameters in Arabidopsis thaliana mutants and transgenics. Plant Biotech J 10, 488-500
DOI
|