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http://dx.doi.org/10.5483/BMBRep.2012.45.4.239

Bacillus subtilis HmoB is a heme oxygenase with a novel structure  

Park, Seong-Hun (Department of Life Science, University of Seoul)
Choi, Sa-Rah (Department of Life Science, University of Seoul)
Choe, Jung-Woo (Department of Life Science, University of Seoul)
Publication Information
BMB Reports / v.45, no.4, 2012 , pp. 239-241 More about this Journal
Abstract
Iron availability is limited in the environment and most bacteria have developed a system to acquire iron from host hemoproteins. Heme oxygenase plays an important role by degrading heme group and releasing the essential nutrient iron. The structure of Bacillus subtilis HmoB was determined to 2.0 ${\AA}$ resolution. B. subtilis HmoB contains a typical antibiotic biosynthesis monooxygenase (ABM) domain that spans from 71 to 146 residues and belongs to the IsdG family heme oxygenases. Comparison of HmoB and IsdG family proteins showed that the C-terminal region of HmoB has similar sequence and structure to IsdG family proteins and contains conserved critical residues for heme degradation. However, HmoB is distinct from other IsdG family proteins in that HmoB is about 60 amino acids longer in the N-terminus and does not form a dimer whereas previously studied IsdG family heme oxygenases form functional homodimers. Interestingly, the structure of monomeric HmoB resembles the dimeric structure of IsdG family proteins. Hence, B. subtilis HmoB is a heme oxygenase with a novel structural feature.
Keywords
Antibiotic biosynthesis domain; Crystallography; Ferredoxin-fold; Heme oxygenase;
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1 Skaar, E. P. and Schneewind, O. (2004) Iron-regulated surface determinants (Isd) of Staphylococcus aureus: stealing iron from heme. Microbes. Infect. 6, 390-397.   DOI   ScienceOn
2 Skaar, E. P., Gaspar, A. H. and Schneewind, O. (2004) IsdG and IsdI, heme-degrading enzymes in the cytoplasm of Staphylococcus aureus. J. Biol. Chem. 279, 436-443.   DOI   ScienceOn
3 Gaballa, A. and Helmann, J. D. (2011) Bacillus subtilis Fur represses one of two paralogous haem-degrading monooxygenases. Microbiology 157, 3221-3231.   DOI   ScienceOn
4 Orengo, C. A. and Thornton, J. M. (1993) Alpha plus beta folds revisited: some favoured motifs. Structure 1, 105-120.   DOI   ScienceOn
5 Reynolds, C., Damerell, D. and Jones, S. (2009) ProtorP: a protein-protein interaction analysis server. Bioinformatics 25, 413-414.   DOI   ScienceOn
6 Jones, S. and Thornton, J. M. (1997) Analysis of protein-protein interaction sites using surface patches. J. Mol. Biol. 272, 121-132.   DOI   ScienceOn
7 Otwinowski, Z. and Minor, W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307-326.   DOI
8 Adams, P. D., Afonine, P. V., Bunkoczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L. W., Kapral, G. J., Grosse-Kunstleve, R. W., McCoy, A. J., Moriarty, N. W., Oeffner, R., Read, R. J., Richardson, D. C., Richardson, J. S., Terwilliger, T. C. and Zwart, P. H. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta. Crystallogr. D. Biol. Crystallogr. 66, 213-221.   DOI   ScienceOn
9 Murshudov, G. N., Vagin, A. A. and Dodson, E. J. (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta. Crystallogr. D. Biol. Crystallogr. 53, 240-255.   DOI   ScienceOn
10 Emsley, P., Lohkamp, B., Scott, W. G. and Cowtan, K. (2010) Features and development of Coot. Acta. Crystallogr. D. Biol. Crystallogr 66, 486-501.   DOI   ScienceOn
11 Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R. and Thornton, J. M. (1996) AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8, 477-486.
12 Ratledge, C. and Dover, L. G. (2000) Iron metabolism in pathogenic bacteria. Annu. Rev. Microbiol 54, 881-941.   DOI   ScienceOn
13 Wandersman, C. and Delepelaire, P. (2004) Bacterial iron sources: from siderophores to hemophores. Annu. Rev. Microbiol. 58, 611-647.   DOI   ScienceOn