BioSMACK: a linux live CD for genome-wide association analyses |
Hong, Chang-Bum
(Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health)
Kim, Young-Jin (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) Moon, Sang-Hoon (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) Shin, Young-Ah (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) Go, Min-Jin (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) Kim, Dong-Joon (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) Lee, Jong-Young (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) Cho, Yoon-Shin (Division of Structural and Functional Genomics, Center for Genome Science, National Institute of Health) |
1 | Li, Y., Willer, C. J., Ding, J., Scheet, P. and Abecasis, G. R. (2010) MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes. Genet. Epidemiol 34, 816-834. DOI ScienceOn |
2 | Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A., Bender, D., Maller, J., Sklar, P., de Bakker, P. I., Daly, M. J. and Sham, P. C. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet. 81, 559-575. DOI ScienceOn |
3 | Price, A. L., Patterson, N. J., Plenge, R. M., Weinblatt, M. E., Shadick, N. A. and Reich, D. (2006) Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet 38, 904-909. DOI ScienceOn |
4 | Pritchard, J. K., Stephens, M. and Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics. 155, 945-959. |
5 | Clayton, D. and Leung, H. T. (2007) An R package for analysis of whole-genome association studies. Hum. Hered. 64, 45-51. DOI ScienceOn |
6 | Vetrivel, U. and Pilla, K. (2008) Open discovery: An integrated live Linux platform of Bioinformatics tools. Bioinformation 3, 144-146. DOI ScienceOn |
7 | Estrada, K., Abuseiris, A., Grosveld, F. G., Uitterlinden, A. G., Knoch, T. A. and Rivadeneira, F. (2009) GRIMP: a web- and grid-based tool for high-speed analysis of large-scale genome-wide association using imputed data. Bioinformatics 25, 2750-2752. DOI ScienceOn |
8 | Geeleher, P., Morris, D., Hinde, J. P. and Golden, A. (2009) BioconductorBuntu: a Linux distribution that implements a web-based DNA microarray analysis server. Bioinformatics 25, 1438-1439. DOI ScienceOn |
9 | Thomson, R. C. (2009) PhyLIS: a simple GNU/Linux distribution for phylogenetics and phyloinformatics. Evol. Bioinform. Online 5, 91-95. |
10 | Willer, C. J., Li, Y. and Abecasis, G. R. (2010) METAL: fast and efficient meta-analysis of genomewide association scans. Bioinformatics 26, 2190-2191. DOI ScienceOn |
11 | Marchini, J., Howie, B., Myers, S., McVean, G. and Donnelly, P. (2007) A new multipoint method for genome- wide association studies by imputation of genotypes. Nat. Genet. 39, 906-913. DOI ScienceOn |