Stabilization of the primary sigma factor of Staphylococcus aureus by core RNA polymerase |
Mondal, Rajkrishna
(Department of Biochemistry, Bose Institute)
Ganguly, Tridib (School of Life Sciences, IISER) Chanda, Palas K. (Department of Biochemistry, Bose Institute) Bandhu, Amitava (Department of Biochemistry, Bose Institute) Jana, Biswanath (Department of Biochemistry, Bose Institute) Sau, Keya (School of Biotechnology and Life Sciences, Haldia Institute of Technology) Lee, Chia-Y. (Department of Microbiology and Immunology, University of Arkansas for Medical Sciences) Sau, Subrata (Department of Biochemistry, Bose Institute) |
1 | Chanda, P. K., Ganguly, T., Das, M., Lee, C. Y., Luong, T. T. and Sau, S.(2007) Detection of antistaphylococcal and toxic compounds by biological assay systems developed with a reporter Staphylococcus aureus strain harboring a heat inducible promoter - lacZ transcriptional fusion. J. Biochem. Mol. Biol. 40, 936-943 DOI PUBMED |
2 | Tyson, P. A. and Steinberg, M. (1987) Accessibility of tryptophan residues in Na, K-ATPase. J. Biol. Chem. 262, 4644-4648 PUBMED |
3 | Greene, R. F. Jr. and Pace, C. N. (1974) Urea and guanidine hydrochloride denaturation of ribonuclease, lysozyme, alpha-chymotrypsin, and beta lactoglobulin. J. Biol. Chem. 249, 5388-5393 PUBMED |
4 | Vassylyeva, M. N., Lee, J., Sekine, S. I., Laptenko, O., Kuramitsu, S., Shibata, T., Inoue, Y., Borukhov, S., Vassylyev, D. G. and Yokoyama, S. (2002) Purification, crystallization and initial crystallographic analysis of RNA polymerase holoenzyme from Thermus thermophilus. Acta Crystallogr. D. Biol. Crystallogr. 58, 1497-1500 DOI ScienceOn |
5 | Nagai, H. and Shimamoto, N. (1997). Regions of the Escherichia coli primary sigma factor sigma70 that are involved in interaction with RNA polymerase core enzyme. Genes Cells 2, 725-734 DOI ScienceOn |
6 | Ganguly, T., Das, M., Bandhu, A., Chanda, P. K., Jana, B., Mondal, R. and Sau, S. (2009) Physicochemical properties and distinct DNA binding capacity of the repressor of temperate Staphylococcus aureus phage phi11. FEBS J. 276, 1975-1985 DOI PUBMED ScienceOn |
7 | Das, M., Ganguly, T., Chattoraj, P., Chanda, P. K., Bandhu, A., Lee, C. Y. and Sau, S. (2007) Overexpression, purification and characterization of repressor of temperate S. aureus phage . J. Biochem. Mol. Biol. 40, 740-748 DOI |
8 | Draghi, D. C., Sheehan, D. F., Hogan, P. and Sahm, D. F. (2006) Current antimicrobial resistance profiles among methicillin resistant Staphylococcus aureus encountered in the outpatient setting. Diagn. Microbiol. Infect. Dis. 55, 129-133 DOI ScienceOn |
9 | Wessel, D. and Fugge, U. I. (1984) A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Analytical Biochemistry 138, 141-143 DOI ScienceOn |
10 | Ganguly, T., Bandhu, A., Chattoraj, P., Chanda, P. K., Das, M., Mandal, N. C. and Sau, S. (2007) Repressor of temperate mycobacteriophage L1 harbors a stable C-terminal domain and binds to different asymmetric operator DNAs with variable affinity. Virol. J. 4, 64 DOI ScienceOn |
11 | Das, M., Ganguly, T., Bandhu, A., Mondal, R., Chanda, P. K., Jana, B. and Sau, S. (2009) Moderately thermostable phage Phi11 Cro repressor has novel DNA-binding capacity and physicochemical properties. BMB Rep. 42, 160-165 DOI PUBMED ScienceOn |
12 | Chang, B. Y. and Doi, R. H. (1993) Conformational properties of Bacillus subtilis RNA polymerase sigma A factor during transcription initiation. Biochem. J. 294, 43-47 DOI PUBMED |
13 | Wen, Y. D., Liao, C. T., Liou, K. M., Wang, W. H., Huang, W. C. and Chang, B. Y. (2000) Structural and functional properties of a Bacillus subtilis temperature- sensitive sigma(A) factor. Proteins 40, 613-622 DOI ScienceOn |
14 | Chopra , I. (2007) Bacterial RNA polymerase: a promising target for the discovery of new antimicrobial agents. Curr. Opin. Investig. Drugs 8, 600-607 PUBMED |
15 | Bergendahl, V., Heyduk, T. and Burgess, R. R. (2003) Luminescence Resonance Energy Transfer-Based High-Throughput Screening Assay for Inhibitors of Essential Protein-Protein Interactions in Bacterial RNA Polymerase. Appl. Environ. Microbiol. 69, 1492-1498 DOI ScienceOn |
16 | Sau, S., Chattoraj, P., Ganguly, T., Chanda, P. K. and Mandal, N. C. (2008) Inactivation of indispensable bacterial proteins by early proteins of bacteriophages: implication in antibacterial drug discovery. Curr. Protein Pept. Sci. 9, 284-290 DOI ScienceOn |
17 | Deora, R. and Misra, T. K. (1996) Characterization of the primary sigma factor of Staphylococcus aureus. J. Biol. Chem. 271, 21828-21834 DOI ScienceOn |
18 | Borukhov, S. and Nudler, E. (2003) RNA polymerase holoenzyme: structure, function and biological implications. Curr. Opin. Microbiol. 6, 93-100 DOI ScienceOn |
19 | Paget, M. S. and Helmann, J. D. (2003) The sigma70 family of sigma factors. Genome Biol. 4, 203 DOI PUBMED |
20 | Sambrook, J. and Russell, D. W. (2001) Molecular Cloning: A Laboratory Manual. 3rd ed., Cold Spring Harbor Laboratory Press, CSH, New York, USA |
21 | Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. and Struhl, K. (1998) Current Protocols in Molecular Biology. John Wiley & Sons, Inc., USA |
22 | Bohm, G., Muhr, R. and Jaenicke, R. (1992) Quantitative analysis of protein far UVcircular dichroism spectra by neural networks. Protein Eng. 5, 191-195 DOI PUBMED |
23 | Somerville, G. A. and Proctor, R. A. (2009) At the Crossroads of Bacterial Metabolism and Virulence Factor Synthesis in Staphylococci. Microbiol. Mol. Biol. Rev. 73, 233-248 DOI ScienceOn |
24 | Deora, R. and Misra, T. K. (1995) Purification and characterization of DNA dependent RNA polymerase from Staphylococcus aureus. Biochem. Biophys. Res. Commun. 208, 610-616 DOI ScienceOn |
25 | Novick, R. P (2006) Staphylococcal pathogenesis and pathogenicity factors: genetics and regulation, in Grampositive Pathogens, 2nd ed. Fischetti, V. A., Novick, R. P., Ferretti, J. J., Portnoy, D. A. and Rood, J. I. (eds.), pp. 496-516, ASM Press, Washington DC, USA |
26 | Severinova, E., Severinov, K., Fenyo, D., Marr, M., Brody, E. N., Roberts, J. W., Chait, B. T. and Darst, S. A. (1996) Domain organization of the Escherichia coli RNA poly merase sigma 70 subunit. J. Mol. Biol. 263, 637-647 DOI ScienceOn |