Development of Penicillium italicum-Specific Primers for Rapid Detection among Fungal Isolates in Citrus |
Chen, Kai
(School of Bioengineering and Food, Hubei University of Technology)
Tian, Zhonghuan (Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University) Jiang, Fatang (School of Bioengineering and Food, Hubei University of Technology) Long, Chao-an (Key Laboratory of Horticultural Plant Biology of the Ministry of Education, National Centre of Citrus Breeding, Huazhong Agricultural University) |
1 | Marcet-Houben M, Ballester AR, de la Fuente B, Harries E, Marcos JF, Gonzalez-Candelas L, et al. 2012. Genome sequence of the necrotrophic fungus Penicillium digitatum, the main postharvest pathogen of citrus. BMC Genomics 13: 646. DOI |
2 | Specht T, Dahlmann TA, Zadra I, Kurnsteiner H, Kuck U. 2014. Complete sequencing and chromosome-scale genome assembly of the industrial progenitor strain P2niaD18 from the penicillin producer Penicillium chrysogenum. Genome Announc. 2: e00577-14. |
3 | Amselem J, Cuomo CA, Van Kan JA, Viaud M, Benito EP, Couloux A, et al. 2011. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. PLoS Genet. 7: e1002230. DOI |
4 | Kiss L. 2012. Limits of nuclear ribosomal DNA internal transcribed spacer (ITS) sequences as species barcodes for Fungi. Proc. Natl. Acad. Sci. USA 109: E1811. DOI |
5 | Fox GE, Wisotzkey JD, Jurtshuk JR P. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Evol. Microbiol. 42: 166-170. |
6 | Song YL, Kato N, Liu CX, Matsumiya Y, Kato H, Watanabe K. 2000. Rapid identification of 11 human intestinal Lactobacillus species by multiplex PCR assays using group-and speciesspecific primers derived from the 16S-23S rRNA intergenic spacer region and its flanking 23S rRNA. FEMS Microbiol. Lett. 187: 167-173. DOI |
7 | Rikkinen J. 2013. Molecular studies on cyanobacterial diversity in lichen symbioses. MycoKeys 6: 3-32. DOI |
8 | Tournas V, Katsoudas E. 2005. Mould and yeast flora in fresh berries, grapes and citrus fruits. Int. J. Food Microbiol. 105: 11-17. DOI |
9 | Wiese J, Ohlendorf B, Blumel M, Schmaljohann R, Imhoff JF. 2011. Phylogenetic identification of fungi isolated from the marine sponge Tethya aurantium and identification of their secondary metabolites. Mar. Drugs 9: 561-585. DOI |
10 | Xu X, Chen J, Xu H, Li D. 2014. Role of amajor facilitator superfamily transporter in adaptation capacity of Penicillium funiculosum under extreme acidic stress. Fungal Genet. Biol. 69: 75-83. DOI |
11 | Zhu P, Wu L, Liu L, Huang L, Wang Y, Tang W, et al. 2013. Fusarium asiaticum: an emerging pathogen jeopardizing postharvest asparagus spears. J. Phytopathol. 161: 696-703. DOI |
12 | Martineau F, Picard FJ, Ke D, Paradis S, Roy PH, Ouellette M, et al. 2001. Development of a PCR assay for identification of staphylococci at genus and species levels. J. Clin. Microbiol. 39: 2541-2547. DOI |
13 | Alastruey-Izquierdo A, Hoffmann K, de Hoog GS, Rodriguez-Tudela JL, Voigt K, Bibashi E, et al. 2010. Species recognition and clinical relevance of the zygomycetous genus Lichtheimia (syn. Absidia pro parte, Mycocladus). J. Clin. Microbiol. 48: 2154-2170. DOI |
14 | Kepler RM, Humber RA, Bischoff JF, Rehner SA. 2014. Clarification of generic and species boundaries for Metarhizium and related fungi through multigene phylogenetics. Mycologia 106: 811-829. DOI |
15 | Walter J, Tannock GW, Tilsala-Timisjarvi A, Rodtong S, Loach DM, Munro K, et al. 2000. Detection and identification of gastrointestinal Lactobacillus species by using denaturing gradient gel electrophoresis and species-specific PCR primers. Appl. Environ. Microbiol. 66: 297-303. DOI |
16 | McGinnis S, Madden TL. 2004. BLAST: at the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32: 20-25. |
17 | Chen K, Tian Z, Wang L, Long CA. 2017. Development of specific primers based on the genomes of Penicillium spp. for rapid detection of Penicillium digitatum among fungal isolates in citrus. Eur. J. Plant Pathol. 149: 201-209. DOI |
18 | Youssef K, Ligorio A, Sanzani SM, Nigro F, Ippolito A. 2012. Postharvest Biol. Technol. 72: 57-63. DOI |
19 | Yin GH, Zhang YL, Pennerman KK, Wu GX, Hua SST, Yu JJ, et al. 2017. Characterization of blue mold Penicillium species isolated from stored fruits using multiple highly conserved loci. J. Fungi 3: 12. DOI |
20 | Chen S, Yao H, Han J, Liu C, Song J, Shi L, et al. 2010. Validation of the ITS2 region as a novel DNA barcode for identifying medicinal plant species. PLoS One 5: e8613. DOI |
21 | Li BQ, Zong Y, Du Z, Chen Y, Zhang Z, Qin GZ, et al. 2015 Genomic characterization reveals insights into patulin biosynthesis and pathogenicity in Penicillium species. Mol. Plant Microbe Interact. 28: 635-647. DOI |
22 | Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, et al. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc. Natl. Acad. Sci. USA 109: 6241-6246. DOI |
23 | Parson W, Pegoraro K, Niederstatter H, Foger M, Steinlechner M. 2000. Species identification by means of the cytochrome b gene. Int. J. Legal Med. 114: 23-28. DOI |
24 | Nilsson RH, Kristiansson E, Ryberg M, Hallenberg N, Larsson KH. 2008. Intraspecific ITS variability in the kingdom Fungi as expressed in the international sequence databases and its implications for molecular species identification. Evol. Bioinform. Online 4: 193-201. |