Browse > Article
http://dx.doi.org/10.4014/jmb.1703.03075

Chitinimonas naiadis sp. nov., Isolated from a Freshwater River  

Padakandla, Shalem Raj (Division of Biotechnology, Chonbuk National University)
Chae, Jong-Chan (Division of Biotechnology, Chonbuk National University)
Publication Information
Journal of Microbiology and Biotechnology / v.27, no.7, 2017 , pp. 1300-1305 More about this Journal
Abstract
A rod shaped, aerobic, Gram-stain-negative, and motile bacterium, strain $AR2^T$, was isolated from a water sample of Yeongsan river, Republic of Korea. Strain $AR2^T$ clustered closely with the members of the genus Chitinimonas and showed the highest 16S rRNA gene sequence similarity with Chitinimonas prasina $LY03^T$ (96.4%), Chitinimonas viridis $HMD2169^T$ (96.4%), Chitinimonas taiwanensis $cf^T$ (96.2%), and Chitinimonas koreensis $R2A43-10^T$ (94.2%). The predominant fatty acids of strain $AR2^T$ were identified to be summed feature 3 (comprising $C_{16:1}{\omega}7c$ and/or $C_{16:1}{\omega}6c$), $C_{16:0}$, and $C_{10:0}3-OH$. Diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylethanolamine were found to be the major polar lipids. The genomic DNA G+C content was 60.4 mol%. Based on the polyphasic characterization, the isolated strain $AR2^T$ is described as a representative of a novel species in the genus Chitinimonas, for which the name Chitinimonas naiadis sp. nov. (type strain =$AR2^T$ =KCTC $42755^T$ =JCM $31504^T$) is proposed.
Keywords
Chitinimonas; polyphasic taxonomy;
Citations & Related Records
연도 인용수 순위
  • Reference
1 Chang SC, Wang JT, Vandamme P, Hwang JH, Chang PS, Chen WM. 2004. Chitinimonas taiwanensis gen. nov., sp. nov., a novel chitinolytic bacterium isolated from a freshwater pond for shrimp culture. Syst. Appl. Microbiol. 27: 43-49.   DOI
2 Kim BY, Weon HY, Yoo SH, Chen WM, Kwon SW, Go SJ, Stackebrandt E. 2006. Chitinimonas koreensis sp. nov., isolated from greenhouse soil in Korea. Int. J. Syst. Evol. Microbiol. 56: 1761-1764.   DOI
3 Joung Y, Lee BI, Kang H, Kim H, Joh K. 2014. Chitinimonas viridis sp. nov., isolated from a mesotrophic artificial lake. Int. J. Syst. Evol. Microbiol. 64: 1123-1126.   DOI
4 Li Y , Zh u H, L ai Q , Lei X, C hen Z , Zh ang H, et al. 2014. Chitinimonas prasina sp. nov., isolated from lake water. Int. J. Syst. Evol. Microbiol. 64: 3005-3009.   DOI
5 Li Y , Lei X, Zhu H, Zh ang H, Guan C, C h en Z , et al. 2016. Chitinase producing bacteria with direct algicidal activity on marine diatoms. Sci. Rep. 6: 21984.   DOI
6 Tindall BJ, Rossello-Mora R, Busse H-J, Ludwig W, Kampfer P. 2010. Notes on the characterization of prokaryote strains for taxonomic purposes. Int. J. Syst. Evol. Microbiol. 60: 249-266.   DOI
7 Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
8 Fitch WM. 1972. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20: 406-416.
9 Edwards AWF, Cavalli-Sforza LL. 1963. The reconstruction of evolution. Ann. Hum. Genet. 27: 105.
10 Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, et al. 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37: 463-464.   DOI
11 Tindall BJ, Sikorski J, Smibert RM, Kreig NR. 2007. Phenotypic characterization and the principles of comparative systematics, pp. 330-393. In Reddy CA, Beveridge TJ, Breznak JA, Marzluf G, Schmidt TM, Snyder LR (eds.), Methods for General and Molecular Microbiology, 3rd Ed. American Society of Microbiology, Washington DC. USA.
12 Padakandla SR, Chae J-C. 2017. Reclassification of Aeromonas sharmana to a new genus as Pseudaeromonas sharmana gen. nov., comb. nov and description of Pseudaeromonas pectinilytica sp. nov. isolated from a fresh water stream. Int. J. Syst. Evol. Microbiol. 67: 1018-1023.   DOI
13 Buck JD. 1982. Nonstaining (KOH) method for determination of Gram reactions of marine bacteria. Appl. Environ. Microbiol. 44: 992-993.
14 Tamaoka J, Fujimura Y-K, Kuraishi H. 1983. Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J. Appl. Microbiol. 54: 31-36.
15 Sasser M. 2001. Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101.
16 Marmur J. 1961. A procedure for the isolation of deoxyribonucleic acid from microorganisms. J. Mol. Biol. 3: 208-218.   DOI
17 Cappuccino JG, Sherman N. 1998. Microbiology - A Laboratory Manual, 4th Ed. Benjamin/Cummings Science Publishing, San Francisco, CA. USA.
18 Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, et al. 1984. An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J. Microbiol. Methods 2: 233-241.   DOI
19 Kates M. 1972. Techniques of Lipidology. Elsevier, New York. USA.
20 Oren A, Duker S, Ritter S. 1996. The polar lipid composition of Walsby's square bacterium. FEMS Microbiol Lett. 138: 135-140.   DOI
21 Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, et al. 2012. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int. J. Syst. Evol. Microbiol. 62: 716-721.   DOI
22 Gonzalez JM, Saiz-Jimenez C. 2002. A fluorimetric method for the estimation of G+C mol% content in microorganisms by thermal denaturation temperature. Environ. Microbiol. 4: 770-773.   DOI
23 Padakandla SR, Lee G-W, Chae J-C. 2015. Paenibacillus gelatinilyticus sp. nov. a psychrotolerant bacterium isolated from a reclaimed soil and amended description of Paenibacillus shenyangensis. Antonie Van Leeuwenhoek. 108: 1197-1203.   DOI
24 Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.   DOI
25 Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013.MEGA6: Molecular Evolutionary Genetics Analysis Version6.0. Mol. Biol. Evol. 30: 2725-2729.   DOI
26 Kimura M. 1983. The Neutral Theory of Molecular Evolution. Cambridge University Press, Cambridge. UK.