Genome Characteristics of Lactobacillus fermentum Strain JDFM216 for Application as Probiotic Bacteria |
Jang, Sung Yong
(Department of Animal Science and Institute of Milk Genomics, Chonbuk National University)
Heo, Jaeyoung (Department of Animal Biotechnology, Chonbuk National University) Park, Mi Ri (Department of Animal Science and Institute of Milk Genomics, Chonbuk National University) Song, Min-Ho (Department of Animal Science and Biotechnology, Chungnam National University) Kim, Jong Nam (Department of Beef & Dairy Science, Korea National College of Agriculture and Fisheries) Jo, Sung Ho (Microbial Institute for Fermentation Industry) Jeong, Do-Youn (Microbial Institute for Fermentation Industry) Lee, Hak Kyo (Department of Animal Biotechnology, Chonbuk National University) Kim, Younghoon (Department of Animal Science and Institute of Milk Genomics, Chonbuk National University) Oh, Sangnam (Department of Animal Science and Institute of Milk Genomics, Chonbuk National University) |
1 | Song M, Yun B, Moon JH, Park DJ, Lim K, Oh S. 2015. Characterization of selected Lactobacillus strains for use as probiotics. Korean J. Food Sci. Anim. Resour. 35: 551-556. DOI |
2 | Heller KJ. 2001. Probiotic bacteria in fermented foods: product characteristics and starter organisms. Am. J. Clin. Nutr. 73: 374S-379S. DOI |
3 | Barretto C, Ngom-Bru C, Genevaz A, Fournier C, Moine D, Kassam M, et al. 2016. Genome sequence of Lactobacillus fermentum strain NCC2970 (CNCM I-5068). Genome Announc. 4: e01254-e01216. |
4 | Lopez-Huertas E. 2015. Safety and efficacy of human breast milk Lactobacillus fermentum CECT 5716. A mini-review of studies with infant formulae. Benef. Microbes 6: 219-224. DOI |
5 | Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, et al. 2008. The RAST server: rapid annotations using subsystems technology. BMC Genomics 9: 75. DOI |
6 | Wu S, Zhu Z, Fu L, Niu B, Li W. 2011. WebMGA: a customizable web server for fast metagenomic sequence analysis. BMC Genomics 12: 444. DOI |
7 | Richter M, Rossello-Mora R. 2009. Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci. USA 106: 19126-19131. DOI |
8 | Aslam SN, Erbs G, Morrissey KL, Newman MA, Chinchilla D, Boller T, et al. 2009. Microbe-associated molecular pattern (MAMP) s ignatures, synergy, size and charge: influences on perception or mobility and host defence responses. Mol. Plant Pathol. 10: 375-387. DOI |
9 | Wheeler R, Chevalier G, Eberl G, Gomperts Boneca I. 2014. The biology of bacterial peptidoglycans and their impact on host immunity and physiology. Cell. Microbiol. 16: 1014-1023. DOI |
10 | FAO/WHO. 2002. Guidelines for the evaluation of probiotics in food. Food and Agriculture Organization of the United Nations and World Health Organization Working Group Report. Accessed July 20, 2011. http://www.who.int/foodsafety/ fs_management/en/probiotic_guidelines.pdf. |
11 | Sornplang P, Piyadeatsoontorn S. 2016. Probiotic isolates from unconventional sources: a review. J. Anim. Sci. Technol. 58: 26. DOI |
12 | Fuller R. 1989. Probiotics in man and animals. J. Appl. Bacteriol. 66: 365-378. DOI |
13 | Yang Z. 2007. PAML 4: phylogenetic analysis by maximum likelihood. Mol. Biol. Evol. 24: 1586-1591. DOI |
14 | Kim KM, Sung S, Caetano-Anollés G, Han JY, Kim H. 2008. An approach of orthology detection from homologous sequences under minimum evolution. Nucleic Acids Res. 36:e110. DOI |
15 | Löytynoja A, Goldman N. 2008. Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis. Science 320: 1632-1635. DOI |
16 | Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013.MEGA6: molecular evolutionary genetics analysis version6.0. Mol. Biol. Evol. 30: 2725-2729. DOI |
17 | Brown-Borg HM, Buffenstein R. 2016. Cutting back on the essentials: can manipulating intake of specific amino acids modulate health and lifespan? Ageing Res. Rev. DOI:10.1016/ j.arr.2016.08.007. DOI |
18 | Chen H, Zheng X, Zheng Y. 2014. Age-associated loss of lamin-B leads to systemic inflammation and gut hyperplasia. Cell 159: 829-843. DOI |
19 | Kim Y, Mylonakis E. 2012. Caenorhabditis elegans immune conditioning with the probiotic bacterium Lactobacillus acidophilus strain NCFM enhances gram-positive immune responses. Infect. Immun. 80: 2500-2508. DOI |
20 | Obeid R. 2013. The metabolic burden of methyl donor deficiency with focus on the betaine homocysteine methyltransferase pathway. Nutrients 5: 3481-3495. DOI |
21 | Obata F, Miura M. 2016. Enhancing S-adenosyl-methionine catabolism extends Drosophila lifespan. Nat. Commun. 18: 8332. |
22 | Cabreiro F, Au C, Leung KY, Vergara-Irigaray N, Cocheme HM, Noori T, et al. 2013. Metformin retards aging in C. elegans by altering microbial folate and methionine metabolism. Cell 153: 228-239. DOI |